Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMK1P53667 SMG8-203ENST00000578922 2178 ntBASIC18.74■□□□□ 0.59
LIMK1P53667 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMK1P53667 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMK1P53667 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
LIMK1P53667 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMK1P53667 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.73■□□□□ 0.59
LIMK1P53667 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMK1P53667 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
LIMK1P53667 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMK1P53667 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMK1P53667 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.73■□□□□ 0.59
LIMK1P53667 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMK1P53667 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.73■□□□□ 0.59
LIMK1P53667 AP002469.2-201ENST00000531724 424 ntBASIC18.73■□□□□ 0.59
LIMK1P53667 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMK1P53667 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
LIMK1P53667 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMK1P53667 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.73■□□□□ 0.59
LIMK1P53667 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.73■□□□□ 0.59
LIMK1P53667 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMK1P53667 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
LIMK1P53667 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMK1P53667 AC087289.5-201ENST00000586076 3175 ntBASIC18.73■□□□□ 0.59
LIMK1P53667 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
LIMK1P53667 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 PKD1P6-201ENST00000343738 4769 ntBASIC18.72■□□□□ 0.59
LIMK1P53667 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMK1P53667 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 CHCHD2P8-201ENST00000429873 447 ntBASIC18.72■□□□□ 0.59
LIMK1P53667 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.72■□□□□ 0.59
LIMK1P53667 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMK1P53667 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LIMK1P53667 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 AC092597.1-201ENST00000487352 616 ntBASIC18.72■□□□□ 0.59
LIMK1P53667 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.72■□□□□ 0.59
LIMK1P53667 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.72■□□□□ 0.59
LIMK1P53667 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
LIMK1P53667 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
LIMK1P53667 AL732292.2-201ENST00000609649 430 ntBASIC18.72■□□□□ 0.59
LIMK1P53667 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMK1P53667 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
LIMK1P53667 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMK1P53667 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.71■□□□□ 0.59
LIMK1P53667 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMK1P53667 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LIMK1P53667 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
LIMK1P53667 BX323043.1-201ENST00000641006 1765 ntBASIC18.71■□□□□ 0.59
LIMK1P53667 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LIMK1P53667 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
LIMK1P53667 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
LIMK1P53667 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.71■□□□□ 0.59
LIMK1P53667 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
LIMK1P53667 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
LIMK1P53667 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
LIMK1P53667 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
LIMK1P53667 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMK1P53667 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMK1P53667 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
LIMK1P53667 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.7■□□□□ 0.58
LIMK1P53667 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LIMK1P53667 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.7■□□□□ 0.58
LIMK1P53667 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.7■□□□□ 0.58
LIMK1P53667 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 AL671883.3-201ENST00000603274 991 ntBASIC18.7■□□□□ 0.58
LIMK1P53667 BX640515.1-201ENST00000617215 977 ntBASIC18.7■□□□□ 0.58
LIMK1P53667 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.7■□□□□ 0.58
LIMK1P53667 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.7■□□□□ 0.58
LIMK1P53667 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms