Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
COL18A1P39060 AL109659.2-201ENST00000606809 1674 ntBASIC25.07■■□□□ 1.6
COL18A1P39060 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
COL18A1P39060 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
COL18A1P39060 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
COL18A1P39060 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
COL18A1P39060 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC25.07■■□□□ 1.6
COL18A1P39060 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
COL18A1P39060 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC25.07■■□□□ 1.6
COL18A1P39060 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC25.07■■□□□ 1.6
COL18A1P39060 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC25.07■■□□□ 1.6
COL18A1P39060 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC25.06■■□□□ 1.6
COL18A1P39060 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC25.06■■□□□ 1.6
COL18A1P39060 KRT18P23-201ENST00000435622 1283 ntBASIC25.06■■□□□ 1.6
COL18A1P39060 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC25.06■■□□□ 1.6
COL18A1P39060 RCC2P3-201ENST00000418112 1537 ntBASIC25.06■■□□□ 1.6
COL18A1P39060 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL18A1P39060 LBX2-AS1-202ENST00000603175 2083 ntBASIC25.06■■□□□ 1.6
COL18A1P39060 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC25.06■■□□□ 1.6
COL18A1P39060 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
COL18A1P39060 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL18A1P39060 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL18A1P39060 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
COL18A1P39060 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC25.05■■□□□ 1.6
COL18A1P39060 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL18A1P39060 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
COL18A1P39060 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL18A1P39060 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
COL18A1P39060 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL18A1P39060 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC25.05■■□□□ 1.6
COL18A1P39060 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL18A1P39060 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC25.05■■□□□ 1.6
COL18A1P39060 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL18A1P39060 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL18A1P39060 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL18A1P39060 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
COL18A1P39060 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL18A1P39060 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
COL18A1P39060 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC25.05■■□□□ 1.6
COL18A1P39060 AP005901.3-202ENST00000581653 237 ntBASIC25.05■■□□□ 1.6
COL18A1P39060 AC120114.3-201ENST00000611923 658 ntBASIC25.05■■□□□ 1.6
COL18A1P39060 GXYLT1P4-201ENST00000613576 1192 ntBASIC25.05■■□□□ 1.6
COL18A1P39060 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
COL18A1P39060 AC092667.1-201ENST00000434301 2586 ntBASIC25.05■■□□□ 1.6
COL18A1P39060 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC25.05■■□□□ 1.6
COL18A1P39060 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL18A1P39060 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
COL18A1P39060 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC25.04■■□□□ 1.6
COL18A1P39060 AC091607.1-201ENST00000490318 1060 ntBASIC25.04■■□□□ 1.6
COL18A1P39060 CALM1-205ENST00000553542 877 ntTSL 5 BASIC25.04■■□□□ 1.6
COL18A1P39060 AL592071.1-201ENST00000611956 408 ntBASIC25.04■■□□□ 1.6
COL18A1P39060 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL18A1P39060 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL18A1P39060 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL18A1P39060 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COL18A1P39060 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
COL18A1P39060 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
COL18A1P39060 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC25.03■■□□□ 1.6
COL18A1P39060 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL18A1P39060 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL18A1P39060 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
COL18A1P39060 IGHV3-47-201ENST00000425060 335 ntBASIC25.03■■□□□ 1.6
COL18A1P39060 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC25.03■■□□□ 1.6
COL18A1P39060 CDV3-207ENST00000508481 661 ntTSL 3 BASIC25.03■■□□□ 1.6
COL18A1P39060 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
COL18A1P39060 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL18A1P39060 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC25.03■■□□□ 1.6
COL18A1P39060 NAT14-202ENST00000587400 416 ntTSL 5 BASIC25.03■■□□□ 1.6
COL18A1P39060 AL121912.1-201ENST00000603683 238 ntBASIC25.03■■□□□ 1.6
COL18A1P39060 AL121772.3-201ENST00000610840 674 ntBASIC25.03■■□□□ 1.6
COL18A1P39060 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL18A1P39060 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL18A1P39060 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
COL18A1P39060 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL18A1P39060 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL18A1P39060 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC25.03■■□□□ 1.6
COL18A1P39060 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL18A1P39060 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL18A1P39060 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC25.03■■□□□ 1.6
COL18A1P39060 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC25.03■■□□□ 1.6
COL18A1P39060 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
COL18A1P39060 AC008556.1-201ENST00000610908 2040 ntBASIC25.02■■□□□ 1.6
COL18A1P39060 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL18A1P39060 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC25.02■■□□□ 1.6
COL18A1P39060 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL18A1P39060 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL18A1P39060 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
COL18A1P39060 KRT8P7-201ENST00000533003 1432 ntBASIC25.02■■□□□ 1.6
COL18A1P39060 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
COL18A1P39060 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC25.02■■□□□ 1.6
COL18A1P39060 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC25.02■■□□□ 1.6
COL18A1P39060 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
COL18A1P39060 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC25.02■■□□□ 1.6
COL18A1P39060 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC25.02■■□□□ 1.6
COL18A1P39060 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC25.02■■□□□ 1.6
COL18A1P39060 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC25.02■■□□□ 1.6
COL18A1P39060 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC25.02■■□□□ 1.6
COL18A1P39060 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
COL18A1P39060 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
COL18A1P39060 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms