Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.53■□□□□ 0.56
HOXC4P09017 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.53■□□□□ 0.56
HOXC4P09017 AC036111.1-201ENST00000533973 1582 ntBASIC18.53■□□□□ 0.56
HOXC4P09017 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.53■□□□□ 0.56
HOXC4P09017 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.53■□□□□ 0.56
HOXC4P09017 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC4P09017 RCC2P3-201ENST00000418112 1537 ntBASIC18.53■□□□□ 0.56
HOXC4P09017 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC4P09017 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC4P09017 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 AL032819.2-201ENST00000624543 2162 ntBASIC18.52■□□□□ 0.56
HOXC4P09017 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.52■□□□□ 0.56
HOXC4P09017 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.52■□□□□ 0.56
HOXC4P09017 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.52■□□□□ 0.56
HOXC4P09017 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.52■□□□□ 0.56
HOXC4P09017 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.52■□□□□ 0.56
HOXC4P09017 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.52■□□□□ 0.56
HOXC4P09017 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.52■□□□□ 0.56
HOXC4P09017 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.52■□□□□ 0.56
HOXC4P09017 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC4P09017 AC093484.2-201ENST00000580996 2166 ntBASIC18.52■□□□□ 0.56
HOXC4P09017 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.52■□□□□ 0.56
HOXC4P09017 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.52■□□□□ 0.55
HOXC4P09017 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HOXC4P09017 RNF165-205ENST00000588679 2904 ntBASIC18.52■□□□□ 0.55
HOXC4P09017 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.52■□□□□ 0.55
HOXC4P09017 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.51■□□□□ 0.55
HOXC4P09017 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HOXC4P09017 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HOXC4P09017 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
HOXC4P09017 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.51■□□□□ 0.55
HOXC4P09017 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.51■□□□□ 0.55
HOXC4P09017 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
HOXC4P09017 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HOXC4P09017 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.51■□□□□ 0.55
HOXC4P09017 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 KRT18P38-201ENST00000449496 1282 ntBASIC18.51■□□□□ 0.55
HOXC4P09017 AL671277.2-201ENST00000458060 996 ntBASIC18.51■□□□□ 0.55
HOXC4P09017 AC034232.1-201ENST00000506026 1064 ntBASIC18.51■□□□□ 0.55
HOXC4P09017 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.51■□□□□ 0.55
HOXC4P09017 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HOXC4P09017 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.51■□□□□ 0.55
HOXC4P09017 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.51■□□□□ 0.55
HOXC4P09017 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.51■□□□□ 0.55
HOXC4P09017 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
HOXC4P09017 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.51■□□□□ 0.55
HOXC4P09017 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.51■□□□□ 0.55
HOXC4P09017 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HOXC4P09017 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.51■□□□□ 0.55
HOXC4P09017 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC4P09017 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HOXC4P09017 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HOXC4P09017 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.5■□□□□ 0.55
HOXC4P09017 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HOXC4P09017 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HOXC4P09017 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HOXC4P09017 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HOXC4P09017 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
HOXC4P09017 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.5■□□□□ 0.55
HOXC4P09017 MIR564-202ENST00000385049 94 ntBASIC18.5■□□□□ 0.55
HOXC4P09017 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.5■□□□□ 0.55
HOXC4P09017 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.5■□□□□ 0.55
HOXC4P09017 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.5■□□□□ 0.55
HOXC4P09017 AL359075.1-203ENST00000462729 1002 ntBASIC18.5■□□□□ 0.55
HOXC4P09017 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.5■□□□□ 0.55
HOXC4P09017 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
HOXC4P09017 AC091076.1-201ENST00000610741 619 ntBASIC18.5■□□□□ 0.55
HOXC4P09017 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HOXC4P09017 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HOXC4P09017 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HOXC4P09017 HOXB1-202ENST00000577092 1414 ntBASIC18.49■□□□□ 0.55
HOXC4P09017 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HOXC4P09017 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HOXC4P09017 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HOXC4P09017 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HOXC4P09017 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.49■□□□□ 0.55
HOXC4P09017 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.49■□□□□ 0.55
HOXC4P09017 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.49■□□□□ 0.55
HOXC4P09017 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms