Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.88■□□□□ 0.13
ABCA1O95477 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
ABCA1O95477 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
ABCA1O95477 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.88■□□□□ 0.13
ABCA1O95477 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC15.88■□□□□ 0.13
ABCA1O95477 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.88■□□□□ 0.13
ABCA1O95477 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC15.88■□□□□ 0.13
ABCA1O95477 AC112907.2-201ENST00000448639 330 ntBASIC15.88■□□□□ 0.13
ABCA1O95477 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.88■□□□□ 0.13
ABCA1O95477 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC15.88■□□□□ 0.13
ABCA1O95477 AP003041.3-201ENST00000527151 707 ntBASIC15.88■□□□□ 0.13
ABCA1O95477 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.88■□□□□ 0.13
ABCA1O95477 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC15.88■□□□□ 0.13
ABCA1O95477 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA1O95477 AC099778.1-201ENST00000568593 1911 ntBASIC15.88■□□□□ 0.13
ABCA1O95477 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
ABCA1O95477 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC15.87■□□□□ 0.13
ABCA1O95477 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA1O95477 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
ABCA1O95477 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
ABCA1O95477 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC15.87■□□□□ 0.13
ABCA1O95477 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
ABCA1O95477 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC15.87■□□□□ 0.13
ABCA1O95477 AP000523.1-201ENST00000398242 1049 ntBASIC15.87■□□□□ 0.13
ABCA1O95477 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC15.87■□□□□ 0.13
ABCA1O95477 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC15.87■□□□□ 0.13
ABCA1O95477 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.87■□□□□ 0.13
ABCA1O95477 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA1O95477 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
ABCA1O95477 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC15.87■□□□□ 0.13
ABCA1O95477 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC15.87■□□□□ 0.13
ABCA1O95477 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA1O95477 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA1O95477 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
ABCA1O95477 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA1O95477 ZNF444P1-201ENST00000559497 298 ntBASIC15.87■□□□□ 0.13
ABCA1O95477 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC15.87■□□□□ 0.13
ABCA1O95477 KRT8P45-201ENST00000414328 1447 ntBASIC15.87■□□□□ 0.13
ABCA1O95477 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA1O95477 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
ABCA1O95477 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA1O95477 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
ABCA1O95477 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC15.86■□□□□ 0.13
ABCA1O95477 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC15.86■□□□□ 0.13
ABCA1O95477 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
ABCA1O95477 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
ABCA1O95477 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC15.86■□□□□ 0.13
ABCA1O95477 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
ABCA1O95477 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
ABCA1O95477 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.86■□□□□ 0.13
ABCA1O95477 Telomerase-vert.1-201ENST00000363312 438 ntBASIC15.86■□□□□ 0.13
ABCA1O95477 ATP5G2P1-201ENST00000433580 426 ntBASIC15.86■□□□□ 0.13
ABCA1O95477 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC15.86■□□□□ 0.13
ABCA1O95477 MIR3652-201ENST00000579335 131 ntBASIC15.86■□□□□ 0.13
ABCA1O95477 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
ABCA1O95477 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
ABCA1O95477 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
ABCA1O95477 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
ABCA1O95477 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.86■□□□□ 0.13
ABCA1O95477 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA1O95477 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA1O95477 AC246785.2-201ENST00000432512 513 ntBASIC15.85■□□□□ 0.13
ABCA1O95477 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.85■□□□□ 0.13
ABCA1O95477 NPAP1P7-201ENST00000613027 823 ntBASIC15.85■□□□□ 0.13
ABCA1O95477 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA1O95477 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC15.85■□□□□ 0.13
ABCA1O95477 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA1O95477 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA1O95477 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA1O95477 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC15.85■□□□□ 0.13
ABCA1O95477 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms