Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF40O75150 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF40O75150 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF40O75150 AC135050.7-201ENST00000624508 2218 ntBASIC20.45■□□□□ 0.86
RNF40O75150 DPP3P2-201ENST00000416030 1696 ntBASIC20.45■□□□□ 0.86
RNF40O75150 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF40O75150 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF40O75150 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
RNF40O75150 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
RNF40O75150 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF40O75150 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF40O75150 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF40O75150 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.44■□□□□ 0.86
RNF40O75150 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF40O75150 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.44■□□□□ 0.86
RNF40O75150 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.44■□□□□ 0.86
RNF40O75150 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.44■□□□□ 0.86
RNF40O75150 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
RNF40O75150 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF40O75150 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF40O75150 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF40O75150 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
RNF40O75150 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF40O75150 AP000997.3-201ENST00000623333 2250 ntBASIC20.44■□□□□ 0.86
RNF40O75150 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF40O75150 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF40O75150 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
RNF40O75150 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF40O75150 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF40O75150 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF40O75150 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF40O75150 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF40O75150 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF40O75150 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF40O75150 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF40O75150 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF40O75150 FAM197Y1-201ENST00000421178 764 ntBASIC20.43■□□□□ 0.86
RNF40O75150 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF40O75150 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF40O75150 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
RNF40O75150 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF40O75150 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF40O75150 KRT8P36-201ENST00000489121 1440 ntBASIC20.43■□□□□ 0.86
RNF40O75150 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF40O75150 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF40O75150 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF40O75150 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
RNF40O75150 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
RNF40O75150 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF40O75150 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF40O75150 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF40O75150 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF40O75150 AIRN-201ENST00000601203 4374 ntBASIC20.42■□□□□ 0.86
RNF40O75150 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF40O75150 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
RNF40O75150 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF40O75150 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.42■□□□□ 0.86
RNF40O75150 AL353807.1-201ENST00000427475 662 ntBASIC20.42■□□□□ 0.86
RNF40O75150 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF40O75150 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.42■□□□□ 0.86
RNF40O75150 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF40O75150 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.42■□□□□ 0.86
RNF40O75150 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF40O75150 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
RNF40O75150 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF40O75150 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF40O75150 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.42■□□□□ 0.86
RNF40O75150 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF40O75150 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
RNF40O75150 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF40O75150 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
RNF40O75150 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF40O75150 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF40O75150 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF40O75150 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF40O75150 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF40O75150 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF40O75150 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
RNF40O75150 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.41■□□□□ 0.86
RNF40O75150 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.41■□□□□ 0.86
RNF40O75150 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
RNF40O75150 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RNF40O75150 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF40O75150 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 MMP23A-201ENST00000234610 1017 ntBASIC20.41■□□□□ 0.86
RNF40O75150 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RNF40O75150 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
RNF40O75150 AL121906.2-201ENST00000621597 723 ntBASIC20.41■□□□□ 0.86
RNF40O75150 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RNF40O75150 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
RNF40O75150 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms