Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AL121906.2-201ENST00000621597 723 ntBASIC25.67■■□□□ 1.7
MSH5O43196 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
MSH5O43196 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
MSH5O43196 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC25.66■■□□□ 1.7
MSH5O43196 AL049812.1-201ENST00000432563 2267 ntBASIC25.66■■□□□ 1.7
MSH5O43196 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC25.66■■□□□ 1.7
MSH5O43196 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
MSH5O43196 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 CDC23-201ENST00000394884 1079 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC25.66■■□□□ 1.7
MSH5O43196 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC25.66■■□□□ 1.7
MSH5O43196 AC073115.1-201ENST00000436056 532 ntTSL 4 BASIC25.66■■□□□ 1.7
MSH5O43196 IL20RB-AS1-201ENST00000462176 562 ntTSL 4 BASIC25.66■■□□□ 1.7
MSH5O43196 NMU-205ENST00000511469 756 ntTSL 3 BASIC25.66■■□□□ 1.7
MSH5O43196 ZNF826P-202ENST00000542380 1067 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC25.66■■□□□ 1.7
MSH5O43196 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC25.66■■□□□ 1.7
MSH5O43196 AC006011.2-201ENST00000621313 1158 ntBASIC25.66■■□□□ 1.7
MSH5O43196 AP003400.5-201ENST00000624827 617 ntBASIC25.66■■□□□ 1.7
MSH5O43196 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC25.66■■□□□ 1.7
MSH5O43196 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
MSH5O43196 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC25.66■■□□□ 1.7
MSH5O43196 AR-207ENST00000612010 3896 ntTSL 5 BASIC25.66■■□□□ 1.7
MSH5O43196 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH5O43196 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC25.65■■□□□ 1.7
MSH5O43196 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH5O43196 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH5O43196 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC25.65■■□□□ 1.7
MSH5O43196 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH5O43196 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC25.65■■□□□ 1.7
MSH5O43196 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
MSH5O43196 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH5O43196 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH5O43196 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MSH5O43196 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC25.65■■□□□ 1.7
MSH5O43196 AC116562.2-201ENST00000507042 360 ntBASIC25.65■■□□□ 1.7
MSH5O43196 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC25.65■■□□□ 1.7
MSH5O43196 C15orf40-209ENST00000538348 561 ntTSL 2 BASIC25.65■■□□□ 1.7
MSH5O43196 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC25.65■■□□□ 1.7
MSH5O43196 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
MSH5O43196 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MSH5O43196 AC005066.1-201ENST00000613582 1007 ntBASIC25.65■■□□□ 1.7
MSH5O43196 AL358472.4-201ENST00000633140 710 ntBASIC25.65■■□□□ 1.7
MSH5O43196 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MSH5O43196 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MSH5O43196 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MSH5O43196 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH5O43196 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC25.64■■□□□ 1.7
MSH5O43196 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
MSH5O43196 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
MSH5O43196 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
MSH5O43196 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC25.64■■□□□ 1.7
MSH5O43196 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
MSH5O43196 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
MSH5O43196 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
MSH5O43196 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC25.64■■□□□ 1.7
MSH5O43196 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
MSH5O43196 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
MSH5O43196 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
MSH5O43196 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
MSH5O43196 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC25.64■■□□□ 1.7
MSH5O43196 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC25.64■■□□□ 1.7
MSH5O43196 ETFRF1-209ENST00000556885 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC25.64■■□□□ 1.7
MSH5O43196 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC25.64■■□□□ 1.7
MSH5O43196 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
MSH5O43196 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
MSH5O43196 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
MSH5O43196 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
MSH5O43196 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
MSH5O43196 PALM-207ENST00000590161 2137 ntTSL 4 BASIC25.64■■□□□ 1.69
MSH5O43196 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
MSH5O43196 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC25.64■■□□□ 1.69
MSH5O43196 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
MSH5O43196 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
MSH5O43196 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC25.63■■□□□ 1.69
MSH5O43196 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC25.63■■□□□ 1.69
MSH5O43196 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
MSH5O43196 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC25.63■■□□□ 1.69
MSH5O43196 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC25.63■■□□□ 1.69
MSH5O43196 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
MSH5O43196 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC25.63■■□□□ 1.69
MSH5O43196 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
MSH5O43196 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC25.63■■□□□ 1.69
MSH5O43196 PARN-205ENST00000539279 1557 ntTSL 2 BASIC25.63■■□□□ 1.69
MSH5O43196 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
MSH5O43196 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
MSH5O43196 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
MSH5O43196 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH5O43196 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms