Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 IRX1P1-201ENST00000438849 1838 ntBASIC19.39■□□□□ 0.7
CBX4O00257 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CBX4O00257 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CBX4O00257 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CBX4O00257 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CBX4O00257 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.39■□□□□ 0.69
CBX4O00257 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
CBX4O00257 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.39■□□□□ 0.69
CBX4O00257 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.39■□□□□ 0.69
CBX4O00257 AL023803.3-201ENST00000615559 522 ntBASIC19.39■□□□□ 0.69
CBX4O00257 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CBX4O00257 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.39■□□□□ 0.69
CBX4O00257 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CBX4O00257 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CBX4O00257 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CBX4O00257 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CBX4O00257 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CBX4O00257 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.39■□□□□ 0.69
CBX4O00257 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.39■□□□□ 0.69
CBX4O00257 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.39■□□□□ 0.69
CBX4O00257 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.39■□□□□ 0.69
CBX4O00257 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.39■□□□□ 0.69
CBX4O00257 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CBX4O00257 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CBX4O00257 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CBX4O00257 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CBX4O00257 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CBX4O00257 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CBX4O00257 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CBX4O00257 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CBX4O00257 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CBX4O00257 AC007663.1-201ENST00000438948 1240 ntBASIC19.38■□□□□ 0.69
CBX4O00257 TSPY17P-201ENST00000450329 467 ntBASIC19.38■□□□□ 0.69
CBX4O00257 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
CBX4O00257 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CBX4O00257 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.38■□□□□ 0.69
CBX4O00257 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.38■□□□□ 0.69
CBX4O00257 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CBX4O00257 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CBX4O00257 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CBX4O00257 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
CBX4O00257 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CBX4O00257 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CBX4O00257 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CBX4O00257 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.37■□□□□ 0.69
CBX4O00257 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.37■□□□□ 0.69
CBX4O00257 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CBX4O00257 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.37■□□□□ 0.69
CBX4O00257 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
CBX4O00257 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CBX4O00257 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CBX4O00257 AC092338.2-201ENST00000568827 1415 ntBASIC19.37■□□□□ 0.69
CBX4O00257 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CBX4O00257 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CBX4O00257 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.37■□□□□ 0.69
CBX4O00257 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CBX4O00257 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.37■□□□□ 0.69
CBX4O00257 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CBX4O00257 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.37■□□□□ 0.69
CBX4O00257 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.37■□□□□ 0.69
CBX4O00257 AL590326.2-201ENST00000625139 305 ntBASIC19.37■□□□□ 0.69
CBX4O00257 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.37■□□□□ 0.69
CBX4O00257 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CBX4O00257 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CBX4O00257 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.37■□□□□ 0.69
CBX4O00257 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.37■□□□□ 0.69
CBX4O00257 FEM1AP3-201ENST00000403722 1741 ntBASIC19.37■□□□□ 0.69
CBX4O00257 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
CBX4O00257 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CBX4O00257 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.36■□□□□ 0.69
CBX4O00257 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.36■□□□□ 0.69
CBX4O00257 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.36■□□□□ 0.69
CBX4O00257 AC113347.1-201ENST00000413321 391 ntBASIC19.36■□□□□ 0.69
CBX4O00257 SLC25A3P1-201ENST00000443844 931 ntBASIC19.36■□□□□ 0.69
CBX4O00257 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.36■□□□□ 0.69
CBX4O00257 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 AL353719.1-201ENST00000566847 864 ntBASIC19.36■□□□□ 0.69
CBX4O00257 FAM87A-204ENST00000613235 858 ntBASIC19.36■□□□□ 0.69
CBX4O00257 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.36■□□□□ 0.69
CBX4O00257 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CBX4O00257 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.36■□□□□ 0.69
CBX4O00257 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.35■□□□□ 0.69
CBX4O00257 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.35■□□□□ 0.69
CBX4O00257 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CBX4O00257 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms