Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 RNA5SP127-201ENST00000411051 133 ntBASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 AL358232.1-201ENST00000448030 501 ntBASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 RN7SL303P-201ENST00000469773 251 ntBASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 RN7SL132P-201ENST00000478131 296 ntBASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 RN7SL810P-201ENST00000493031 276 ntBASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 CYCSP29-201ENST00000533731 318 ntBASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 POLR3GP1-201ENST00000594073 261 ntBASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 FTX_3.1-201ENST00000610451 147 ntBASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 AC068724.3-201ENST00000625906 87 ntBASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 AC006971.1-201ENST00000407916 4486 ntBASIC4.09□□□□□ -1.75
RNFT1Q5M7Z0 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.09□□□□□ -1.76
RNFT1Q5M7Z0 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.09□□□□□ -1.76
RNFT1Q5M7Z0 AC002543.1-201ENST00000299783 1954 ntBASIC4.09□□□□□ -1.76
RNFT1Q5M7Z0 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.76
RNFT1Q5M7Z0 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
RNFT1Q5M7Z0 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
RNFT1Q5M7Z0 AL672167.1-204ENST00000641875 3017 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 Y_RNA.634-201ENST00000364811 113 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 AL590004.2-201ENST00000404787 371 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 AC099548.1-201ENST00000421443 426 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 HMGN2P30-201ENST00000423237 256 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 RN7SL98P-201ENST00000462271 300 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 AC010531.2-201ENST00000465012 153 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 SRIP1-201ENST00000489235 288 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 AC108022.1-201ENST00000493466 478 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 SNORA31.20-201ENST00000517111 133 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 MTND6P33-201ENST00000571794 183 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 CPHL1P-201ENST00000461341 3407 ntBASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.08□□□□□ -1.76
RNFT1Q5M7Z0 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 RNU6-972P-201ENST00000391208 107 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 EI24P2-201ENST00000397776 1076 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 RNU2-32P-201ENST00000411193 191 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 CYCSP48-201ENST00000417124 323 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 PHBP16-201ENST00000446318 950 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 AC012308.1-201ENST00000451232 178 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 AC107297.1-201ENST00000459991 176 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 RPL23AP54-201ENST00000495129 419 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 AIG1P1-201ENST00000503376 148 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 SNORA70.16-201ENST00000516390 95 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 RNU6-113P-201ENST00000516653 101 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 RNU1-117P-201ENST00000517041 158 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 AC015912.2-201ENST00000571053 181 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 AL021997.2-201ENST00000615674 271 ntBASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
RNFT1Q5M7Z0 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 Y_RNA.91-201ENST00000363042 107 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 RNU6-1280P-201ENST00000365211 107 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 Y_RNA.342-201ENST00000365352 113 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 SNORA26-201ENST00000391286 122 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 Y_RNA.593-201ENST00000410292 98 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 PGBD4P5-201ENST00000445958 426 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 RNU6-365P-201ENST00000517113 106 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 AC105245.1-201ENST00000581934 244 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 AL049861.1-201ENST00000603130 150 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 AC012468.1-201ENST00000604888 430 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 AC093732.2-201ENST00000607950 274 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 AC018692.3-201ENST00000623929 123 ntBASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
RNFT1Q5M7Z0 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms