Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXC1Q12948 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXC1Q12948 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
FOXC1Q12948 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
FOXC1Q12948 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
FOXC1Q12948 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXC1Q12948 AC103988.1-201ENST00000566382 2177 ntBASIC4.36□□□□□ -1.71
FOXC1Q12948 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
FOXC1Q12948 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
FOXC1Q12948 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.35□□□□□ -1.71
FOXC1Q12948 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.35□□□□□ -1.71
FOXC1Q12948 AL356292.1-201ENST00000283110 373 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 RNY1P1-201ENST00000364372 112 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 SNORA1-201ENST00000384107 130 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 Y_RNA.486-201ENST00000384398 107 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 MIR586-201ENST00000385035 97 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 RNU6-1197P-201ENST00000391183 107 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 AL117342.1-201ENST00000404861 406 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.35□□□□□ -1.71
FOXC1Q12948 AL445584.1-201ENST00000431451 330 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.35□□□□□ -1.71
FOXC1Q12948 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.35□□□□□ -1.71
FOXC1Q12948 RNU6-830P-201ENST00000516353 107 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 TVP23BP1-201ENST00000557500 617 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 AC105137.2-201ENST00000569073 466 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 SNRPGP15-201ENST00000600149 222 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 AC107294.3-201ENST00000609211 526 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 MIR6867-201ENST00000610636 67 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 MIR8059-201ENST00000620427 81 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 AC002064.3-201ENST00000623448 346 ntBASIC4.35□□□□□ -1.71
FOXC1Q12948 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
FOXC1Q12948 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
FOXC1Q12948 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
FOXC1Q12948 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
FOXC1Q12948 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
FOXC1Q12948 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.35□□□□□ -1.71
FOXC1Q12948 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.34□□□□□ -1.71
FOXC1Q12948 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.34□□□□□ -1.71
FOXC1Q12948 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.34□□□□□ -1.71
FOXC1Q12948 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
FOXC1Q12948 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.34□□□□□ -1.71
FOXC1Q12948 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
FOXC1Q12948 ZFRP1-201ENST00000457579 2970 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
FOXC1Q12948 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.34□□□□□ -1.71
FOXC1Q12948 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
FOXC1Q12948 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
FOXC1Q12948 AC068254.2-201ENST00000623938 3577 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 Y_RNA.40-201ENST00000362645 93 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 Y_RNA.290-201ENST00000364879 114 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 MIR562-201ENST00000384894 95 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
FOXC1Q12948 AL356095.1-201ENST00000417217 199 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 AL356535.1-201ENST00000440335 398 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 AL500522.2-201ENST00000448562 343 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 AC011406.1-201ENST00000512440 370 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 RNU6-857P-201ENST00000515893 110 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 RPL23AP91-201ENST00000569211 455 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 MIR3129-201ENST00000581095 76 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 AL929325.1-201ENST00000603096 117 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 AC113403.1-201ENST00000604910 193 ntBASIC4.34□□□□□ -1.71
FOXC1Q12948 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
FOXC1Q12948 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.72
FOXC1Q12948 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.72
FOXC1Q12948 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
FOXC1Q12948 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
FOXC1Q12948 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.33□□□□□ -1.72
FOXC1Q12948 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
FOXC1Q12948 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
FOXC1Q12948 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC4.33□□□□□ -1.72
FOXC1Q12948 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
FOXC1Q12948 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
FOXC1Q12948 RNU6-529P-201ENST00000363383 104 ntBASIC4.33□□□□□ -1.72
FOXC1Q12948 RNU6-497P-201ENST00000365316 104 ntBASIC4.33□□□□□ -1.72
FOXC1Q12948 MT-TI-201ENST00000387365 69 ntBASIC4.33□□□□□ -1.72
FOXC1Q12948 AC245102.2-201ENST00000448956 180 ntBASIC4.33□□□□□ -1.72
FOXC1Q12948 snoU13.4-201ENST00000458916 104 ntBASIC4.33□□□□□ -1.72
FOXC1Q12948 snoU13.14-201ENST00000459372 104 ntBASIC4.33□□□□□ -1.72
FOXC1Q12948 RPL27AP5-201ENST00000469428 449 ntBASIC4.33□□□□□ -1.72
FOXC1Q12948 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
FOXC1Q12948 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC4.33□□□□□ -1.72
FOXC1Q12948 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.33□□□□□ -1.72
FOXC1Q12948 RN7SL703P-201ENST00000578485 302 ntBASIC4.33□□□□□ -1.72
FOXC1Q12948 MIR4662B-201ENST00000579498 81 ntBASIC4.33□□□□□ -1.72
FOXC1Q12948 Pinc.1-201ENST00000616452 154 ntBASIC4.33□□□□□ -1.72
FOXC1Q12948 AC012314.7-201ENST00000619693 93 ntBASIC4.33□□□□□ -1.72
FOXC1Q12948 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
FOXC1Q12948 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
FOXC1Q12948 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
FOXC1Q12948 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.33□□□□□ -1.72
FOXC1Q12948 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
FOXC1Q12948 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
FOXC1Q12948 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
FOXC1Q12948 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.33□□□□□ -1.72
FOXC1Q12948 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
FOXC1Q12948 OR51H2P-202ENST00000641424 3046 ntBASIC4.32□□□□□ -1.72
FOXC1Q12948 ANKRD20A9P-201ENST00000457997 2978 ntBASIC4.32□□□□□ -1.72
FOXC1Q12948 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXC1Q12948 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
FOXC1Q12948 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms