Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AC124916.1-201ENST00000444020 547 ntBASIC3.62□□□□□ -1.83
NKX3-2P78367 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.62□□□□□ -1.83
NKX3-2P78367 HMGB3P8-201ENST00000449709 577 ntBASIC3.62□□□□□ -1.83
NKX3-2P78367 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.62□□□□□ -1.83
NKX3-2P78367 RNU6-1282P-201ENST00000516735 96 ntBASIC3.62□□□□□ -1.83
NKX3-2P78367 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.62□□□□□ -1.83
NKX3-2P78367 MIR4643-201ENST00000577473 78 ntBASIC3.62□□□□□ -1.83
NKX3-2P78367 MIR4672-201ENST00000583126 81 ntBASIC3.62□□□□□ -1.83
NKX3-2P78367 AL513302.2-201ENST00000562313 1842 ntBASIC3.62□□□□□ -1.83
NKX3-2P78367 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX3-2P78367 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.61□□□□□ -1.83
NKX3-2P78367 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
NKX3-2P78367 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-2P78367 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-2P78367 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-2P78367 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.61□□□□□ -1.83
NKX3-2P78367 Y_RNA.150-201ENST00000363562 102 ntBASIC3.61□□□□□ -1.83
NKX3-2P78367 RNY1-201ENST00000364228 113 ntBASIC3.61□□□□□ -1.83
NKX3-2P78367 Y_RNA.297-201ENST00000364950 91 ntBASIC3.61□□□□□ -1.83
NKX3-2P78367 SNORD116-20-201ENST00000384529 92 ntBASIC3.61□□□□□ -1.83
NKX3-2P78367 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-2P78367 AC016700.2-201ENST00000446011 156 ntBASIC3.61□□□□□ -1.83
NKX3-2P78367 RPL23AP67-201ENST00000465341 474 ntBASIC3.61□□□□□ -1.83
NKX3-2P78367 AP000870.1-201ENST00000472927 406 ntBASIC3.61□□□□□ -1.83
NKX3-2P78367 RPS23P5-201ENST00000495419 428 ntBASIC3.61□□□□□ -1.83
NKX3-2P78367 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.61□□□□□ -1.83
NKX3-2P78367 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-2P78367 AC008885.1-201ENST00000514930 301 ntBASIC3.61□□□□□ -1.83
NKX3-2P78367 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-2P78367 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-2P78367 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-2P78367 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-2P78367 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-2P78367 FTX_2.1-201ENST00000618816 94 ntBASIC3.61□□□□□ -1.83
NKX3-2P78367 AC091903.1-201ENST00000624322 454 ntBASIC3.61□□□□□ -1.83
NKX3-2P78367 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-2P78367 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
NKX3-2P78367 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
NKX3-2P78367 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.6□□□□□ -1.83
NKX3-2P78367 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.6□□□□□ -1.83
NKX3-2P78367 SNORD56.1-201ENST00000362913 68 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 RNU6-884P-201ENST00000363889 107 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 SNORD32A-201ENST00000364805 84 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 SNORA54-201ENST00000384281 123 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 RNA5SP213-201ENST00000391031 106 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 RN7SKP220-201ENST00000410611 288 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.6□□□□□ -1.83
NKX3-2P78367 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.6□□□□□ -1.83
NKX3-2P78367 EIF1P2-201ENST00000428233 350 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.6□□□□□ -1.83
NKX3-2P78367 AC087477.1-201ENST00000465747 340 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 AC021205.2-201ENST00000480069 347 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.6□□□□□ -1.83
NKX3-2P78367 RNU6-496P-201ENST00000516145 99 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 RNU4-71P-201ENST00000516258 113 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-2P78367 BX284668.6-201ENST00000606899 438 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 RMST_6.1-201ENST00000611980 203 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 AC004792.1-201ENST00000614523 137 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 AC137590.2-201ENST00000619709 240 ntBASIC3.6□□□□□ -1.83
NKX3-2P78367 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-2P78367 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-2P78367 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.6□□□□□ -1.83
NKX3-2P78367 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-2P78367 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-2P78367 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
NKX3-2P78367 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-2P78367 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
NKX3-2P78367 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.59□□□□□ -1.83
NKX3-2P78367 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
NKX3-2P78367 Y_RNA.29-201ENST00000362570 113 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 RNU6-879P-201ENST00000364328 108 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 SNORA29-201ENST00000384183 140 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 RNU6-843P-201ENST00000384454 104 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 Y_RNA.555-201ENST00000384673 110 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 MIR487A-201ENST00000385009 80 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 AL031121.1-201ENST00000406553 254 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 AL139156.1-201ENST00000412785 841 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 RPL26P27-201ENST00000414397 437 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 HMGN2P30-201ENST00000423237 256 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 SSXP4-201ENST00000451349 245 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 HSPE1P25-201ENST00000455484 251 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 AC006026.2-201ENST00000457376 180 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 Y_RNA.700-201ENST00000516806 100 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 uc_338.1-201ENST00000612113 180 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 SNORA43.4-201ENST00000629559 138 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 AC073073.2-201ENST00000609827 2578 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 SRP72P2-201ENST00000344851 1979 ntBASIC3.59□□□□□ -1.83
NKX3-2P78367 RNA5SP361-201ENST00000362686 118 ntBASIC3.58□□□□□ -1.84
NKX3-2P78367 SNORD115-32-201ENST00000364079 82 ntBASIC3.58□□□□□ -1.84
NKX3-2P78367 RNU1-100P-201ENST00000365255 165 ntBASIC3.58□□□□□ -1.84
NKX3-2P78367 AC126124.2-201ENST00000413542 321 ntBASIC3.58□□□□□ -1.84
NKX3-2P78367 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.58□□□□□ -1.84
NKX3-2P78367 RPS15AP7-201ENST00000439294 405 ntBASIC3.58□□□□□ -1.84
NKX3-2P78367 MIR6134-201ENST00000617606 109 ntBASIC3.58□□□□□ -1.84
NKX3-2P78367 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.58□□□□□ -1.84
NKX3-2P78367 AP001486.2-201ENST00000561652 5113 ntBASIC3.58□□□□□ -1.84
NKX3-2P78367 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
NKX3-2P78367 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms