Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC104073.3-201ENST00000610942 955 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.17□□□□□ -2.22
FOXA1P55317 AL603755.1-201ENST00000619504 163 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 U1.36-201ENST00000620684 176 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.17□□□□□ -2.22
FOXA1P55317 SEPT14P19-203ENST00000633205 211 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
FOXA1P55317 AL391987.6-201ENST00000305671 199 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 RNU6-1285P-201ENST00000363480 105 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 MIR499A-201ENST00000384903 122 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 MIR150-201ENST00000385048 84 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
FOXA1P55317 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC1.16□□□□□ -2.22
FOXA1P55317 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.16□□□□□ -2.22
FOXA1P55317 CBX3P6-201ENST00000430257 527 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.16□□□□□ -2.22
FOXA1P55317 AC243964.1-201ENST00000441814 261 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 AC009474.2-201ENST00000451383 136 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.16□□□□□ -2.22
FOXA1P55317 RNA5SP269-201ENST00000459032 137 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC1.16□□□□□ -2.22
FOXA1P55317 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.16□□□□□ -2.22
FOXA1P55317 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.16□□□□□ -2.22
FOXA1P55317 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC1.16□□□□□ -2.22
FOXA1P55317 AC093259.1-201ENST00000509755 300 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 MTCO3P28-201ENST00000513351 515 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.16□□□□□ -2.22
FOXA1P55317 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.16□□□□□ -2.22
FOXA1P55317 AP001893.2-201ENST00000526949 202 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 LRRC34P1-201ENST00000542742 915 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.16□□□□□ -2.22
FOXA1P55317 AL160236.1-201ENST00000556317 195 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC1.16□□□□□ -2.22
FOXA1P55317 MIR4713-201ENST00000582691 75 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 CYP2C61P-201ENST00000604072 290 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 Z99289.3-201ENST00000605586 594 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 AC008945.2-201ENST00000606056 604 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 AC006566.1-201ENST00000608943 513 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.16□□□□□ -2.22
FOXA1P55317 AC091931.1-201ENST00000623488 728 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.16□□□□□ -2.22
FOXA1P55317 AC091812.1-201ENST00000432235 1948 ntBASIC1.16□□□□□ -2.22
FOXA1P55317 AC233981.2-201ENST00000611524 1614 ntBASIC1.15□□□□□ -2.22
FOXA1P55317 RNU1-58P-201ENST00000362413 163 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 Y_RNA.169-201ENST00000363745 96 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 Y_RNA.327-201ENST00000365201 102 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.15□□□□□ -2.23
FOXA1P55317 RNU6-456P-201ENST00000384493 107 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
FOXA1P55317 RNU4-46P-201ENST00000410818 138 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 RNA5SP501-201ENST00000410990 112 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 RNU2-41P-201ENST00000410991 178 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 RNU6-1245P-201ENST00000411130 106 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA1P55317 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA1P55317 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA1P55317 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 AC021146.2-201ENST00000504736 556 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 MTCO3P7-201ENST00000510008 774 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA1P55317 RNU6-377P-201ENST00000515965 102 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
FOXA1P55317 AL356057.1-201ENST00000533798 831 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 AC023050.3-201ENST00000541142 333 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA1P55317 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA1P55317 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.15□□□□□ -2.23
FOXA1P55317 AC123912.5-201ENST00000605470 343 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA1P55317 AC008993.2-201ENST00000631744 806 ntBASIC1.15□□□□□ -2.23
FOXA1P55317 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
FOXA1P55317 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.15□□□□□ -2.23
FOXA1P55317 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
FOXA1P55317 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.14□□□□□ -2.23
FOXA1P55317 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 RNU4-15P-201ENST00000362613 141 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 RNU6-428P-201ENST00000362942 107 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 Y_RNA.99-201ENST00000363138 105 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 U3.4-201ENST00000363352 213 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 SNORA7.1-201ENST00000363750 139 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 Y_RNA.201-201ENST00000364052 96 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 RNU4-48P-201ENST00000365559 182 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
FOXA1P55317 RNU6-692P-201ENST00000384496 107 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 RNU6-293P-201ENST00000411259 106 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.14□□□□□ -2.23
FOXA1P55317 AC133104.1-201ENST00000429100 218 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.14□□□□□ -2.23
FOXA1P55317 MTCO2P6-201ENST00000463134 685 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 SNRPGP7-201ENST00000469016 106 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.14□□□□□ -2.23
FOXA1P55317 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.14□□□□□ -2.23
FOXA1P55317 SNORA44.1-201ENST00000517031 108 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 Y_RNA.717-201ENST00000517106 92 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.14□□□□□ -2.23
FOXA1P55317 AC115990.1-201ENST00000526957 301 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.14□□□□□ -2.23
FOXA1P55317 AC022254.1-201ENST00000567857 235 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 MIR4703-201ENST00000577728 79 ntBASIC1.14□□□□□ -2.23
FOXA1P55317 AC018889.1-201ENST00000605372 397 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms