Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.33□□□□□ -2.2
USF1P22415 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.33□□□□□ -2.2
USF1P22415 AC013470.1-201ENST00000453438 462 ntBASIC1.33□□□□□ -2.2
USF1P22415 ART2BP-201ENST00000453501 499 ntBASIC1.33□□□□□ -2.2
USF1P22415 RNU1-131P-201ENST00000458943 161 ntBASIC1.33□□□□□ -2.2
USF1P22415 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.33□□□□□ -2.2
USF1P22415 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC1.33□□□□□ -2.2
USF1P22415 AC079140.5-201ENST00000507882 310 ntBASIC1.33□□□□□ -2.2
USF1P22415 FAM206BP-201ENST00000510179 541 ntBASIC1.33□□□□□ -2.2
USF1P22415 AC005741.1-201ENST00000511094 432 ntBASIC1.33□□□□□ -2.2
USF1P22415 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.33□□□□□ -2.2
USF1P22415 MIR449C-201ENST00000516047 92 ntBASIC1.33□□□□□ -2.2
USF1P22415 AC005786.1-201ENST00000588553 154 ntBASIC1.33□□□□□ -2.2
USF1P22415 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.33□□□□□ -2.2
USF1P22415 AC093424.1-201ENST00000604999 338 ntBASIC1.33□□□□□ -2.2
USF1P22415 AC016925.2-201ENST00000605108 242 ntBASIC1.33□□□□□ -2.2
USF1P22415 AL356157.2-201ENST00000605122 111 ntBASIC1.33□□□□□ -2.2
USF1P22415 AC123912.5-201ENST00000605470 343 ntBASIC1.33□□□□□ -2.2
USF1P22415 AC006566.1-201ENST00000608943 513 ntBASIC1.33□□□□□ -2.2
USF1P22415 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.33□□□□□ -2.2
USF1P22415 uc_338.5-201ENST00000611839 155 ntBASIC1.33□□□□□ -2.2
USF1P22415 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
USF1P22415 LINC02555-201ENST00000563933 1951 ntBASIC1.32□□□□□ -2.2
USF1P22415 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
USF1P22415 U3.4-201ENST00000363352 213 ntBASIC1.32□□□□□ -2.2
USF1P22415 RNU4-56P-201ENST00000364700 142 ntBASIC1.32□□□□□ -2.2
USF1P22415 RNU6-1303P-201ENST00000364841 107 ntBASIC1.32□□□□□ -2.2
USF1P22415 RNU6-336P-201ENST00000364891 107 ntBASIC1.32□□□□□ -2.2
USF1P22415 RNU6-692P-201ENST00000384496 107 ntBASIC1.32□□□□□ -2.2
USF1P22415 MIR1-2-201ENST00000384961 85 ntBASIC1.32□□□□□ -2.2
USF1P22415 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.32□□□□□ -2.2
USF1P22415 RN7SKP101-201ENST00000411376 320 ntBASIC1.32□□□□□ -2.2
USF1P22415 AC004965.1-201ENST00000413033 213 ntBASIC1.32□□□□□ -2.2
USF1P22415 AL365203.2-201ENST00000423444 196 ntBASIC1.32□□□□□ -2.2
USF1P22415 AC078809.1-201ENST00000427601 140 ntBASIC1.32□□□□□ -2.2
USF1P22415 RPL31P35-201ENST00000431058 377 ntBASIC1.32□□□□□ -2.2
USF1P22415 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.32□□□□□ -2.2
USF1P22415 SNRPGP7-201ENST00000469016 106 ntBASIC1.32□□□□□ -2.2
USF1P22415 RN7SKP287-201ENST00000516546 266 ntBASIC1.32□□□□□ -2.2
USF1P22415 RNU1-92P-201ENST00000517017 135 ntBASIC1.32□□□□□ -2.2
USF1P22415 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.32□□□□□ -2.2
USF1P22415 AC245014.2-201ENST00000603689 287 ntBASIC1.32□□□□□ -2.2
USF1P22415 AC091805.2-201ENST00000603848 235 ntBASIC1.32□□□□□ -2.2
USF1P22415 AL645939.4-201ENST00000604495 135 ntBASIC1.32□□□□□ -2.2
USF1P22415 AC246785.4-201ENST00000605374 287 ntBASIC1.32□□□□□ -2.2
USF1P22415 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.32□□□□□ -2.2
USF1P22415 AL360219.1-201ENST00000610230 366 ntBASIC1.32□□□□□ -2.2
USF1P22415 MIR8070-201ENST00000616510 88 ntBASIC1.32□□□□□ -2.2
USF1P22415 AC022418.1-201ENST00000624118 445 ntBASIC1.32□□□□□ -2.2
USF1P22415 AP000648.3-201ENST00000623539 4507 ntBASIC1.32□□□□□ -2.2
USF1P22415 MIR424-201ENST00000362227 98 ntBASIC1.31□□□□□ -2.2
USF1P22415 RNU6-428P-201ENST00000362942 107 ntBASIC1.31□□□□□ -2.2
USF1P22415 Y_RNA.327-201ENST00000365201 102 ntBASIC1.31□□□□□ -2.2
USF1P22415 RNU4-48P-201ENST00000365559 182 ntBASIC1.31□□□□□ -2.2
USF1P22415 RNU6-434P-201ENST00000384376 107 ntBASIC1.31□□□□□ -2.2
USF1P22415 RNU6-393P-201ENST00000384475 107 ntBASIC1.31□□□□□ -2.2
USF1P22415 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
USF1P22415 MTCYBP2-201ENST00000407745 171 ntBASIC1.31□□□□□ -2.2
USF1P22415 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC1.31□□□□□ -2.2
USF1P22415 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC1.31□□□□□ -2.2
USF1P22415 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC1.31□□□□□ -2.2
USF1P22415 AC123900.1-201ENST00000420390 96 ntBASIC1.31□□□□□ -2.2
USF1P22415 AL590135.1-201ENST00000422215 156 ntBASIC1.31□□□□□ -2.2
USF1P22415 AC019205.3-201ENST00000424573 156 ntBASIC1.31□□□□□ -2.2
USF1P22415 AC016700.2-201ENST00000446011 156 ntBASIC1.31□□□□□ -2.2
USF1P22415 AC022364.2-201ENST00000457963 554 ntBASIC1.31□□□□□ -2.2
USF1P22415 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.31□□□□□ -2.2
USF1P22415 SNORD42A-201ENST00000459584 64 ntBASIC1.31□□□□□ -2.2
USF1P22415 GMFBP1-201ENST00000467831 427 ntBASIC1.31□□□□□ -2.2
USF1P22415 AC015911.1-201ENST00000495111 156 ntBASIC1.31□□□□□ -2.2
USF1P22415 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC1.31□□□□□ -2.2
USF1P22415 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.31□□□□□ -2.2
USF1P22415 SUB1P4-201ENST00000566062 339 ntBASIC1.31□□□□□ -2.2
USF1P22415 AC109446.2-201ENST00000567872 497 ntBASIC1.31□□□□□ -2.2
USF1P22415 Z84480.1-201ENST00000605131 311 ntBASIC1.31□□□□□ -2.2
USF1P22415 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.31□□□□□ -2.2
USF1P22415 RNU6-338P-201ENST00000383888 105 ntBASIC1.3□□□□□ -2.2
USF1P22415 RPS29P13-201ENST00000402041 169 ntBASIC1.3□□□□□ -2.2
USF1P22415 RN7SKP61-201ENST00000410642 295 ntBASIC1.3□□□□□ -2.2
USF1P22415 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.3□□□□□ -2.2
USF1P22415 AL022238.1-201ENST00000442557 355 ntBASIC1.3□□□□□ -2.2
USF1P22415 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.3□□□□□ -2.2
USF1P22415 PRPS1P1-201ENST00000445305 876 ntBASIC1.3□□□□□ -2.2
USF1P22415 RPS29P15-201ENST00000458329 171 ntBASIC1.3□□□□□ -2.2
USF1P22415 MTCO2P6-201ENST00000463134 685 ntBASIC1.3□□□□□ -2.2
USF1P22415 AC130509.1-201ENST00000464158 433 ntBASIC1.3□□□□□ -2.2
USF1P22415 AC010409.1-201ENST00000487382 476 ntBASIC1.3□□□□□ -2.2
USF1P22415 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.3□□□□□ -2.2
USF1P22415 AC079382.1-201ENST00000493346 557 ntBASIC1.3□□□□□ -2.2
USF1P22415 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC1.3□□□□□ -2.2
USF1P22415 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.3□□□□□ -2.2
USF1P22415 SNORA31.17-201ENST00000516953 127 ntBASIC1.3□□□□□ -2.2
USF1P22415 SNORA31.24-201ENST00000517232 57 ntBASIC1.3□□□□□ -2.2
USF1P22415 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.3□□□□□ -2.2
USF1P22415 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.3□□□□□ -2.2
USF1P22415 AC015720.1-201ENST00000565251 277 ntBASIC1.3□□□□□ -2.2
USF1P22415 MIR4703-201ENST00000577728 79 ntBASIC1.3□□□□□ -2.2
USF1P22415 MIR3915-201ENST00000578518 97 ntBASIC1.3□□□□□ -2.2
USF1P22415 AC110760.3-201ENST00000598794 467 ntBASIC1.3□□□□□ -2.2
USF1P22415 AC107304.1-201ENST00000604229 296 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 243.6 ms