Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CBX4O00257 RNU6-222P-201ENST00000362438 107 ntBASIC3.41□□□□□ -1.86
CBX4O00257 RNU6-238P-201ENST00000363313 106 ntBASIC3.41□□□□□ -1.86
CBX4O00257 RNU6-137P-201ENST00000363680 108 ntBASIC3.41□□□□□ -1.86
CBX4O00257 CD24P4-201ENST00000382840 243 ntBASIC3.41□□□□□ -1.86
CBX4O00257 AC073910.1-201ENST00000445047 438 ntBASIC3.41□□□□□ -1.86
CBX4O00257 snoU13.6-201ENST00000458785 104 ntBASIC3.41□□□□□ -1.86
CBX4O00257 snoU13.14-201ENST00000459372 104 ntBASIC3.41□□□□□ -1.86
CBX4O00257 AC112771.1-201ENST00000463581 102 ntBASIC3.41□□□□□ -1.86
CBX4O00257 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.41□□□□□ -1.86
CBX4O00257 PHBP14-201ENST00000512887 367 ntBASIC3.41□□□□□ -1.86
CBX4O00257 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.41□□□□□ -1.86
CBX4O00257 SNORA31.16-201ENST00000516773 139 ntBASIC3.41□□□□□ -1.86
CBX4O00257 COX6CP5-201ENST00000527162 228 ntBASIC3.41□□□□□ -1.86
CBX4O00257 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.41□□□□□ -1.86
CBX4O00257 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.41□□□□□ -1.86
CBX4O00257 MAPK10-322ENST00000641485 4530 ntBASIC3.41□□□□□ -1.86
CBX4O00257 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.4□□□□□ -1.86
CBX4O00257 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.4□□□□□ -1.86
CBX4O00257 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.4□□□□□ -1.86
CBX4O00257 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.4□□□□□ -1.86
CBX4O00257 RNU6-529P-201ENST00000363383 104 ntBASIC3.4□□□□□ -1.87
CBX4O00257 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
CBX4O00257 U8.10-201ENST00000384260 133 ntBASIC3.4□□□□□ -1.87
CBX4O00257 Y_RNA.471-201ENST00000384312 102 ntBASIC3.4□□□□□ -1.87
CBX4O00257 RNY3P4-201ENST00000384428 101 ntBASIC3.4□□□□□ -1.87
CBX4O00257 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
CBX4O00257 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.4□□□□□ -1.87
CBX4O00257 RPS26P42-201ENST00000413485 326 ntBASIC3.4□□□□□ -1.87
CBX4O00257 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.4□□□□□ -1.87
CBX4O00257 RPL23AP22-201ENST00000437556 453 ntBASIC3.4□□□□□ -1.87
CBX4O00257 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.4□□□□□ -1.87
CBX4O00257 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.4□□□□□ -1.87
CBX4O00257 AP000870.1-201ENST00000472927 406 ntBASIC3.4□□□□□ -1.87
CBX4O00257 HMGB1P35-201ENST00000503360 598 ntBASIC3.4□□□□□ -1.87
CBX4O00257 RPL23AP94-201ENST00000512518 302 ntBASIC3.4□□□□□ -1.87
CBX4O00257 RNU5F-2P-201ENST00000516066 82 ntBASIC3.4□□□□□ -1.87
CBX4O00257 SNORA40.15-201ENST00000516884 107 ntBASIC3.4□□□□□ -1.87
CBX4O00257 AC034114.1-201ENST00000520293 285 ntBASIC3.4□□□□□ -1.87
CBX4O00257 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.4□□□□□ -1.87
CBX4O00257 AC091564.4-201ENST00000533934 2194 ntBASIC3.4□□□□□ -1.87
CBX4O00257 HSPE1P20-201ENST00000538133 289 ntBASIC3.4□□□□□ -1.87
CBX4O00257 AP002770.2-201ENST00000543613 532 ntBASIC3.4□□□□□ -1.87
CBX4O00257 AC079598.5-201ENST00000547460 117 ntBASIC3.4□□□□□ -1.87
CBX4O00257 CYP4A27P-201ENST00000567218 190 ntBASIC3.4□□□□□ -1.87
CBX4O00257 AC107294.3-201ENST00000609211 526 ntBASIC3.4□□□□□ -1.87
CBX4O00257 RMST_8.1-201ENST00000610287 165 ntBASIC3.4□□□□□ -1.87
CBX4O00257 AL359854.1-201ENST00000614203 1594 ntBASIC3.4□□□□□ -1.87
CBX4O00257 AC092628.2-201ENST00000622492 339 ntBASIC3.4□□□□□ -1.87
CBX4O00257 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.4□□□□□ -1.87
CBX4O00257 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.4□□□□□ -1.87
CBX4O00257 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CBX4O00257 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
CBX4O00257 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
CBX4O00257 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
CBX4O00257 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
CBX4O00257 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
CBX4O00257 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.39□□□□□ -1.87
CBX4O00257 AC017071.1-201ENST00000564407 2204 ntBASIC3.39□□□□□ -1.87
CBX4O00257 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.39□□□□□ -1.87
CBX4O00257 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CBX4O00257 RNU6-655P-201ENST00000362858 107 ntBASIC3.39□□□□□ -1.87
CBX4O00257 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.39□□□□□ -1.87
CBX4O00257 RNU6-1083P-201ENST00000384022 107 ntBASIC3.39□□□□□ -1.87
CBX4O00257 RNU1-57P-201ENST00000384491 166 ntBASIC3.39□□□□□ -1.87
CBX4O00257 MIR186-201ENST00000384988 86 ntBASIC3.39□□□□□ -1.87
CBX4O00257 RNU6-1109P-201ENST00000391187 107 ntBASIC3.39□□□□□ -1.87
CBX4O00257 U3.26-201ENST00000391236 204 ntBASIC3.39□□□□□ -1.87
CBX4O00257 RNU1-139P-201ENST00000391307 165 ntBASIC3.39□□□□□ -1.87
CBX4O00257 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.39□□□□□ -1.87
CBX4O00257 Z75741.1-201ENST00000446793 314 ntBASIC3.39□□□□□ -1.87
CBX4O00257 CENPBD1P1-201ENST00000464061 469 ntBASIC3.39□□□□□ -1.87
CBX4O00257 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.39□□□□□ -1.87
CBX4O00257 RAC1P5-201ENST00000512182 576 ntBASIC3.39□□□□□ -1.87
CBX4O00257 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.39□□□□□ -1.87
CBX4O00257 AC027288.2-201ENST00000553028 243 ntBASIC3.39□□□□□ -1.87
CBX4O00257 TGIF1P1-201ENST00000558095 802 ntBASIC3.39□□□□□ -1.87
CBX4O00257 MIR5680-201ENST00000577577 84 ntBASIC3.39□□□□□ -1.87
CBX4O00257 MIR3923-201ENST00000579521 83 ntBASIC3.39□□□□□ -1.87
CBX4O00257 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.39□□□□□ -1.87
CBX4O00257 AL078605.1-201ENST00000603529 500 ntBASIC3.39□□□□□ -1.87
CBX4O00257 AL034555.1-201ENST00000604816 211 ntBASIC3.39□□□□□ -1.87
CBX4O00257 AL121655.1-201ENST00000605811 308 ntBASIC3.39□□□□□ -1.87
CBX4O00257 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.39□□□□□ -1.87
CBX4O00257 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.39□□□□□ -1.87
CBX4O00257 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.39□□□□□ -1.87
CBX4O00257 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
CBX4O00257 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
CBX4O00257 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
CBX4O00257 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CBX4O00257 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CBX4O00257 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CBX4O00257 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
CBX4O00257 RNU6-1210P-201ENST00000363775 107 ntBASIC3.38□□□□□ -1.87
CBX4O00257 RNU6-879P-201ENST00000364328 108 ntBASIC3.38□□□□□ -1.87
CBX4O00257 Y_RNA.276-201ENST00000364732 109 ntBASIC3.38□□□□□ -1.87
CBX4O00257 RNU6-708P-201ENST00000384217 107 ntBASIC3.38□□□□□ -1.87
CBX4O00257 RNU6-713P-201ENST00000384761 107 ntBASIC3.38□□□□□ -1.87
CBX4O00257 MIR568-201ENST00000385036 95 ntBASIC3.38□□□□□ -1.87
CBX4O00257 Z98742.2-201ENST00000431564 187 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms