Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 HMGN2P20-201ENST00000437531 273 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 RPS26P2-201ENST00000440331 348 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 SNRPGP5-201ENST00000456003 220 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 HSPE1P18-201ENST00000517602 280 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 MIR6867-201ENST00000610636 67 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 FAM27D1-201ENST00000612308 341 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 uc_338.13-201ENST00000618243 179 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 MIR8059-201ENST00000620427 81 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 AC092435.4-201ENST00000623012 4159 ntBASIC4.64□□□□□ -1.67
LIMD1Q9UGP4 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 DHX9P1-201ENST00000436565 3076 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 Y_RNA.218-201ENST00000364218 104 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 Y_RNA.261-201ENST00000364631 102 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 RNU6-728P-201ENST00000365375 104 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 MIR586-201ENST00000385035 97 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 SNORA48.5-201ENST00000391143 135 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 PTMAP2-201ENST00000397627 327 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 SCARNA8-201ENST00000515924 131 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 TVP23BP1-201ENST00000557500 617 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 AC090877.1-201ENST00000561418 344 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 MIR4286-201ENST00000580651 93 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 MIR6075-201ENST00000620782 95 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 MIR3658-201ENST00000636291 56 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 AC011266.1-201ENST00000624119 3569 ntBASIC4.63□□□□□ -1.67
LIMD1Q9UGP4 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 RNA5SP387-201ENST00000364226 106 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 Y_RNA.420-201ENST00000384043 110 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 RNU6-80P-201ENST00000384195 107 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 MIR15B-201ENST00000385045 98 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 AL356095.1-201ENST00000417217 199 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 AC245047.8-201ENST00000456455 284 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 RNU6-1211P-201ENST00000459179 105 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 RPL23AP62-201ENST00000463396 453 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 AC114982.1-201ENST00000469402 321 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 RNU6-919P-201ENST00000516731 104 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 RNU6-453P-201ENST00000516819 85 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 LARP7P3-201ENST00000579888 337 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 AC068700.1-201ENST00000565862 3754 ntBASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.62□□□□□ -1.67
LIMD1Q9UGP4 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 RNU6-834P-201ENST00000362367 110 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 RNU1-83P-201ENST00000363426 164 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 RNY3P5-201ENST00000384127 102 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 SNORA11F-201ENST00000408237 128 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 CYCSP19-201ENST00000411715 316 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 AC009237.10-201ENST00000414112 510 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 AC079598.5-201ENST00000547460 117 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 AC233702.9-201ENST00000581528 203 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 RN7SL600P-201ENST00000581811 299 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 MIR6875-201ENST00000617506 72 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 AL159152.1-201ENST00000635019 2587 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 MAPK10-303ENST00000641324 3959 ntBASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.61□□□□□ -1.67
LIMD1Q9UGP4 AL513302.2-201ENST00000562313 1842 ntBASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms