Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL356157.2-201ENST00000605122 111 ntBASIC3.62□□□□□ -1.83
SMC1BQ8NDV3 AC005014.2-201ENST00000607795 599 ntBASIC3.62□□□□□ -1.83
SMC1BQ8NDV3 AC107294.3-201ENST00000609211 526 ntBASIC3.62□□□□□ -1.83
SMC1BQ8NDV3 AC006157.1-201ENST00000611750 366 ntBASIC3.62□□□□□ -1.83
SMC1BQ8NDV3 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.62□□□□□ -1.83
SMC1BQ8NDV3 AC022149.2-201ENST00000621061 203 ntBASIC3.62□□□□□ -1.83
SMC1BQ8NDV3 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.62□□□□□ -1.83
SMC1BQ8NDV3 AC009541.1-201ENST00000438279 2662 ntBASIC3.62□□□□□ -1.83
SMC1BQ8NDV3 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.62□□□□□ -1.83
SMC1BQ8NDV3 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 RNU1-115P-201ENST00000365329 160 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 AP002088.1-201ENST00000382740 395 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 RNU6-843P-201ENST00000384454 104 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 RNU6-19P-201ENST00000384718 107 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 AC096649.2-201ENST00000416186 393 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 AL356968.1-201ENST00000416622 474 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 PTGES3P4-201ENST00000426243 356 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 BX679664.1-201ENST00000434429 253 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 AC243964.1-201ENST00000441814 261 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 RN7SL442P-201ENST00000473804 320 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 AC025754.2-201ENST00000606491 432 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 AC009318.2-201ENST00000610917 651 ntBASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SMC1BQ8NDV3 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 SNORD50.1-201ENST00000362987 71 ntBASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 Y_RNA.148-201ENST00000363557 117 ntBASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 RNU6-99P-201ENST00000364721 107 ntBASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 Y_RNA.364-201ENST00000365532 101 ntBASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 RNU6-700P-201ENST00000391043 107 ntBASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 RPL23AP22-201ENST00000437556 453 ntBASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 RNA5SP380-201ENST00000517190 98 ntBASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 AC107934.2-201ENST00000518653 310 ntBASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 AC025281.1-201ENST00000567026 265 ntBASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 ZNF658B-202ENST00000615961 3375 ntBASIC3.6□□□□□ -1.83
SMC1BQ8NDV3 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 MIR30E-201ENST00000362104 92 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 RNU1-105P-201ENST00000363470 161 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 RNU6-595P-201ENST00000363944 107 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 Y_RNA.314-201ENST00000365114 102 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 RNU6-487P-201ENST00000365430 104 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 RNU6-1032P-201ENST00000384100 107 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 RNY1P14-201ENST00000384426 108 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 RNU6-738P-201ENST00000384531 106 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 RNU6-748P-201ENST00000384648 107 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 RN7SKP192-201ENST00000411291 327 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 EIF1AXP1-201ENST00000419267 435 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 ARL5AP4-201ENST00000430731 512 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 RPS4XP2-201ENST00000458402 793 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 AC117440.1-201ENST00000474107 571 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 RNU7-4P-201ENST00000516961 62 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 SNORA31.23-201ENST00000517219 133 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 AC107016.2-201ENST00000547968 190 ntBASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.59□□□□□ -1.83
SMC1BQ8NDV3 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 Y_RNA.39-201ENST00000362620 98 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 MIR625-201ENST00000385047 85 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 RNU6-750P-201ENST00000390946 107 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 SNORA3.2-201ENST00000408221 125 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 RNA5SP390-201ENST00000410191 113 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 AC007098.1-201ENST00000420122 367 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 MTCYBP10-201ENST00000424905 650 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 AC007969.2-201ENST00000441891 191 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 GSTA11P-201ENST00000452866 669 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 AC079354.2-201ENST00000453523 154 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 RPS26P21-201ENST00000475397 348 ntBASIC3.58□□□□□ -1.84
SMC1BQ8NDV3 AC132942.1-201ENST00000486753 483 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms