Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AP003392.2-201ENST00000527269 208 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC092325.1-201ENST00000566449 554 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC130454.1-201ENST00000622948 401 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC008163.1-202ENST00000636004 2889 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-655P-201ENST00000362858 107 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 Y_RNA.294-201ENST00000364916 102 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 MIR146A-201ENST00000385201 99 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 RNU2-36P-201ENST00000410361 191 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-1054P-201ENST00000411293 104 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 RPL37P10-201ENST00000412884 288 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 EIF1P1-201ENST00000421436 341 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 C8orf59P1-201ENST00000429930 303 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 MTND2P4-201ENST00000445034 1004 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 RNU1-131P-201ENST00000458943 161 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 RPL39P28-201ENST00000465655 155 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 AK3P2-201ENST00000507976 429 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 AP003034.1-201ENST00000534621 422 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 BNIP3P6-201ENST00000549284 499 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 ADI1P3-201ENST00000549509 470 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 AC112187.2-201ENST00000604345 283 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 AC131235.4-201ENST00000609288 620 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 MIR6866-201ENST00000638146 69 ntBASIC0.81□□□□□ -2.28
CCDC88AQ3V6T2 Y_RNA.67-201ENST00000362870 100 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 SNORD3E-201ENST00000362899 217 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-438P-201ENST00000365561 103 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 FCF1P10-201ENST00000407590 479 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 RNA5SP57-201ENST00000459463 123 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 RPS26P55-201ENST00000471178 356 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 AP003465.2-201ENST00000602571 373 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 AP000654.2-201ENST00000605633 586 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 AC004808.1-201ENST00000627671 721 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 SNORD115-3-201ENST00000363100 82 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-271P-201ENST00000363858 105 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 RNU5E-7P-201ENST00000365290 117 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 SNORD116.1-201ENST00000365628 92 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 SNORA12-201ENST00000391162 147 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-293P-201ENST00000411259 106 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 AC013410.2-201ENST00000422627 201 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 USP9YP17-201ENST00000444617 696 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-677P-201ENST00000516914 101 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 AC144521.1-201ENST00000607148 956 ntBASIC0.8□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-862P-201ENST00000362804 105 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-371P-201ENST00000364283 108 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 MIR19B1-201ENST00000384829 87 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 RPL23AP32-201ENST00000395315 459 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 RNA5SP201-201ENST00000410316 124 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 RN7SKP61-201ENST00000410642 295 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 AC069257.2-201ENST00000441819 155 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 HSPE1P23-201ENST00000509838 286 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 AC005741.1-201ENST00000511094 432 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 RNU11-2P-201ENST00000516898 142 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 MTND2P7-201ENST00000521337 640 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 MIR3136-201ENST00000583498 78 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 MZT1P2-201ENST00000604387 248 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 AC121334.2-201ENST00000605387 271 ntBASIC0.79□□□□□ -2.28
CCDC88AQ3V6T2 Y_RNA.33-201ENST00000362591 102 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 SNORA22-201ENST00000383907 134 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-224P-201ENST00000384055 107 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 SNORA22C-201ENST00000384614 134 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 MIR186-201ENST00000384988 86 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 AC245047.4-201ENST00000433189 144 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 AC243964.1-201ENST00000441814 261 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 MED28P2-201ENST00000475771 317 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-914P-201ENST00000516749 109 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 MIR3937-201ENST00000580135 106 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 AC073410.2-201ENST00000603240 332 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 AC007363.1-201ENST00000604736 620 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 MIR1248-201ENST00000629190 106 ntBASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.78□□□□□ -2.28
CCDC88AQ3V6T2 MTATP6P20-201ENST00000414147 562 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 MTND5P2-201ENST00000442927 1142 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 AC112206.3-201ENST00000514578 389 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 RNU6-496P-201ENST00000516145 99 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 AC091163.3-201ENST00000518269 1144 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 AP003168.1-201ENST00000530091 307 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 AC109446.1-201ENST00000566172 220 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 SNORA77B-201ENST00000578179 125 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 AL365434.2-201ENST00000607979 234 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 AC093788.1-201ENST00000609356 927 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 uc_338.11-201ENST00000619132 160 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 AC009033.1-201ENST00000624279 431 ntBASIC0.78□□□□□ -2.29
CCDC88AQ3V6T2 Y_RNA.132-201ENST00000363421 102 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms