Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 Y_RNA.704-201ENST00000516851 102 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
PTPN4P29074 AC034114.1-201ENST00000520293 285 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 AC023050.3-201ENST00000541142 333 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 AC090115.3-201ENST00000553218 849 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 AC091135.1-201ENST00000585943 307 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.04□□□□□ -2.08
PTPN4P29074 AC123912.5-201ENST00000605470 343 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 U2.17-201ENST00000611454 95 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
PTPN4P29074 AL162373.1-201ENST00000620433 407 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 AC091932.3-201ENST00000624223 323 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-212P-201ENST00000362642 104 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-37P-201ENST00000362692 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-11P-201ENST00000364234 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU4-20P-201ENST00000365601 151 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-25P-201ENST00000383873 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-1-201ENST00000383898 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-38P-201ENST00000384085 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-483P-201ENST00000384088 108 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-48P-201ENST00000384161 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-36P-201ENST00000384172 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-4P-201ENST00000384205 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-5P-201ENST00000384238 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-3P-201ENST00000384314 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-16P-201ENST00000384385 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-15P-201ENST00000384534 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 Y_RNA.516-201ENST00000384541 124 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-2-201ENST00000384627 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-29P-201ENST00000384637 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-9-201ENST00000384776 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-33P-201ENST00000384793 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 SNORD37.1-201ENST00000390968 65 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 HMGN2P39-201ENST00000398005 273 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-1140P-201ENST00000410517 106 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 AL356379.1-201ENST00000414105 126 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.03□□□□□ -2.08
PTPN4P29074 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.03□□□□□ -2.08
PTPN4P29074 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.03□□□□□ -2.08
PTPN4P29074 USP9YP18-201ENST00000425912 695 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-333P-201ENST00000459117 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 MTCO3P38-201ENST00000468910 766 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNA5SP401-201ENST00000515920 127 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-314P-201ENST00000516574 104 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.03□□□□□ -2.08
PTPN4P29074 AC107953.1-201ENST00000522216 297 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.03□□□□□ -2.08
PTPN4P29074 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.03□□□□□ -2.08
PTPN4P29074 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.03□□□□□ -2.08
PTPN4P29074 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.03□□□□□ -2.08
PTPN4P29074 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.03□□□□□ -2.08
PTPN4P29074 AC093249.1-201ENST00000567049 203 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 AL356157.2-201ENST00000605122 111 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 BNIP3P10-201ENST00000605360 577 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 AC012557.2-201ENST00000605919 418 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RNU6-6P-201ENST00000606623 107 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 AL627230.6-201ENST00000611129 280 ntBASIC2.03□□□□□ -2.08
PTPN4P29074 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.03□□□□□ -2.08
PTPN4P29074 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.02□□□□□ -2.09
PTPN4P29074 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
PTPN4P29074 MIR181A1-201ENST00000385026 110 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 MIR764-201ENST00000390811 85 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 SNORA46.1-201ENST00000391069 153 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 AL023284.1-201ENST00000403956 276 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.02□□□□□ -2.09
PTPN4P29074 AL121601.2-201ENST00000438019 707 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.02□□□□□ -2.09
PTPN4P29074 USP9YP8-201ENST00000441913 500 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.02□□□□□ -2.09
PTPN4P29074 PMCHL2-203ENST00000457791 237 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 AC087884.1-201ENST00000469738 328 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 RPL30P1-201ENST00000488676 339 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 RNU6-1281P-201ENST00000516223 105 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 COPS8P3-201ENST00000526024 482 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 AL118558.2-201ENST00000556294 238 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.02□□□□□ -2.09
PTPN4P29074 TPRKBP2-201ENST00000565969 475 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.02□□□□□ -2.09
PTPN4P29074 BNIP3P16-201ENST00000589779 534 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 SNRPGP17-201ENST00000603780 214 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
PTPN4P29074 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.02□□□□□ -2.09
PTPN4P29074 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
PTPN4P29074 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
PTPN4P29074 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.01□□□□□ -2.09
PTPN4P29074 RNU6-1215P-201ENST00000384441 102 ntBASIC2.01□□□□□ -2.09
PTPN4P29074 RNU6-1106P-201ENST00000390845 107 ntBASIC2.01□□□□□ -2.09
PTPN4P29074 RNA5SP219-201ENST00000390940 113 ntBASIC2.01□□□□□ -2.09
PTPN4P29074 AL590002.1-201ENST00000406554 418 ntBASIC2.01□□□□□ -2.09
PTPN4P29074 RNU6-908P-201ENST00000410160 94 ntBASIC2.01□□□□□ -2.09
PTPN4P29074 RNA5SP489-201ENST00000410986 109 ntBASIC2.01□□□□□ -2.09
PTPN4P29074 SNORD56-201ENST00000413522 71 ntBASIC2.01□□□□□ -2.09
PTPN4P29074 C8orf59P1-201ENST00000429930 303 ntBASIC2.01□□□□□ -2.09
PTPN4P29074 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.01□□□□□ -2.09
PTPN4P29074 SEPT14P3-201ENST00000439401 183 ntBASIC2.01□□□□□ -2.09
PTPN4P29074 AC007969.2-201ENST00000441891 191 ntBASIC2.01□□□□□ -2.09
PTPN4P29074 AL732372.2-207ENST00000445840 183 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 163.7 ms