Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 RNU6-600P-201ENST00000362524 99 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 RNU4-36P-201ENST00000364294 144 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 RNU6-1138P-201ENST00000365359 106 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 RNU1-106P-201ENST00000384382 164 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 Y_RNA.486-201ENST00000384398 107 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 MIR765-201ENST00000390226 114 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 AL645927.1-201ENST00000396783 406 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 CKS1BP6-201ENST00000424932 240 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 PSMD10P3-201ENST00000437000 448 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 HMGN2P10-201ENST00000448085 265 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 AC073850.1-201ENST00000449243 255 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 snoU13.4-201ENST00000458916 104 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 snoU13.24-201ENST00000458998 104 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 SNORD11-201ENST00000459124 84 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 RNU6-830P-201ENST00000516353 107 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 RNU7-149P-201ENST00000516739 59 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 DEFB131E-201ENST00000532329 154 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 AL390726.5-202ENST00000564800 256 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 AC022254.1-201ENST00000567857 235 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 MIR8069-1-201ENST00000616627 86 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 MIR8069-2-201ENST00000621412 86 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 LINC01355-201ENST00000566551 5444 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 NEAT1-202ENST00000501122 22743 ntBASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
VPS9D1Q9Y2B5 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 RNU4-15P-201ENST00000362613 141 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 RNA5SP507-201ENST00000363603 121 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 RNU4-13P-201ENST00000364019 141 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 SNORA4.2-201ENST00000365313 147 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 SNORA1-201ENST00000384107 130 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 RNU6-1197P-201ENST00000391183 107 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 RPL21P3-201ENST00000395517 478 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 RPL36AP10-201ENST00000421785 322 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 HMGN2P20-201ENST00000437531 273 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 RPL12P3-201ENST00000440080 396 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 OR9P1P-201ENST00000496431 281 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 RN7SL558P-201ENST00000497468 299 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 HMGB1P22-201ENST00000505315 124 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 RNU6-1149P-201ENST00000516810 97 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 RNU6-709P-201ENST00000517257 104 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 IGHVIII-67-2-201ENST00000519849 88 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 MIR4666B-201ENST00000578142 81 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 AL929325.1-201ENST00000603096 117 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 AL121932.1-201ENST00000605542 214 ntBASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS9D1Q9Y2B5 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
VPS9D1Q9Y2B5 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS9D1Q9Y2B5 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.84□□□□□ -1.64
VPS9D1Q9Y2B5 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 Y_RNA.203-201ENST00000364106 102 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 Y_RNA.313-201ENST00000365095 103 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 MIR586-201ENST00000385035 97 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 RN7SKP125-201ENST00000410481 302 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 AC114755.2-201ENST00000413520 361 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 RPL23AP27-201ENST00000415161 451 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 AC093162.1-201ENST00000419682 124 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 EIF4EP4-201ENST00000424916 578 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 AL590762.4-201ENST00000425885 253 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 AL445584.1-201ENST00000431451 330 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 RNA5SP103-201ENST00000459503 118 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 RPL23AP67-201ENST00000465341 474 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 RPL27AP5-201ENST00000469428 449 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 RNU6-504P-201ENST00000516568 104 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 MIR4700-201ENST00000578311 74 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 AC005332.5-201ENST00000591222 2919 ntBASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
VPS9D1Q9Y2B5 AC107027.3-201ENST00000565095 3473 ntBASIC4.82□□□□□ -1.64
VPS9D1Q9Y2B5 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS9D1Q9Y2B5 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
VPS9D1Q9Y2B5 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS9D1Q9Y2B5 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms