Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RNU6-661P-201ENST00000362409 107 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 RNU6ATAC38P-201ENST00000408119 126 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 RNA5SP270-201ENST00000411361 118 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 CYCSP48-201ENST00000417124 323 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 AC003989.2-201ENST00000440224 169 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 RPL30P12-201ENST00000474666 353 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 AC019235.1-201ENST00000503847 207 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 AC008526.1-201ENST00000509149 338 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 RNU2-53P-201ENST00000516257 147 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 APOOP1-201ENST00000604695 592 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 AL138963.2-201ENST00000605137 226 ntBASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
SHROOM4Q9ULL8 Y_RNA.41-201ENST00000362646 102 ntBASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 RNU6-457P-201ENST00000363999 107 ntBASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 RNU6-266P-201ENST00000364225 107 ntBASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 SNORD13-201ENST00000459299 104 ntBASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 AC090515.1-201ENST00000465295 476 ntBASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 AC004486.1-201ENST00000546846 233 ntBASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 AC110588.1-201ENST00000559699 137 ntBASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 HMGB1P33-201ENST00000563485 527 ntBASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 MIR5002-201ENST00000584713 97 ntBASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SHROOM4Q9ULL8 RNA5SP125-201ENST00000364843 120 ntBASIC3.88□□□□□ -1.79
SHROOM4Q9ULL8 MIR544A-201ENST00000384855 91 ntBASIC3.88□□□□□ -1.79
SHROOM4Q9ULL8 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.88□□□□□ -1.79
SHROOM4Q9ULL8 SUMO1P4-201ENST00000429430 302 ntBASIC3.88□□□□□ -1.79
SHROOM4Q9ULL8 MTND3P16-201ENST00000452205 344 ntBASIC3.88□□□□□ -1.79
SHROOM4Q9ULL8 DYNLL1P5-201ENST00000467158 270 ntBASIC3.88□□□□□ -1.79
SHROOM4Q9ULL8 SNORD60.2-201ENST00000516883 86 ntBASIC3.88□□□□□ -1.79
SHROOM4Q9ULL8 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SHROOM4Q9ULL8 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
SHROOM4Q9ULL8 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.88□□□□□ -1.79
SHROOM4Q9ULL8 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.88□□□□□ -1.79
SHROOM4Q9ULL8 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 RNU6-483P-201ENST00000384088 108 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 MIR181A1-201ENST00000385026 110 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 FGF7P8-201ENST00000402994 292 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 RNA5SP181-201ENST00000410246 98 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 RNU6-293P-201ENST00000411259 106 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 USP9YP8-201ENST00000441913 500 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 RPL39P29-201ENST00000447779 157 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 MIR3670-2-201ENST00000582974 65 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 MIR3670-1-201ENST00000584160 65 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 MIR4658-201ENST00000584344 65 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 MIR3670-3-201ENST00000584855 65 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 MIR3670-4-201ENST00000612260 65 ntBASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.87□□□□□ -1.79
SHROOM4Q9ULL8 RNU6-38P-201ENST00000384085 107 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 SNORD116-4-201ENST00000384733 96 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 MIR186-201ENST00000384988 86 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 MIR561-201ENST00000385216 97 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 SEPT14P3-201ENST00000439401 183 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 AC007969.2-201ENST00000441891 191 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 AL732372.2-207ENST00000445840 183 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 AC245517.4-201ENST00000448601 281 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 SEPT14P2-201ENST00000453405 183 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 RNU6-333P-201ENST00000459117 107 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 AL163540.1-201ENST00000485382 386 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 SEPT14P4-201ENST00000513445 186 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 SNORA14.1-201ENST00000516113 141 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 RNU6-720P-201ENST00000516363 108 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 AP005902.1-201ENST00000521358 186 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 FO082796.1-201ENST00000523795 183 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 COPS8P3-201ENST00000526024 482 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 AL138976.2-201ENST00000563989 694 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 RNU6-1222P-201ENST00000384615 107 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 HMGN2P35-201ENST00000412164 270 ntBASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.86□□□□□ -1.79
SHROOM4Q9ULL8 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms