Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.98□□□□□ -2.09
VPS39Q96JC1 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.98□□□□□ -2.09
VPS39Q96JC1 AC091544.4-201ENST00000555268 342 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.98□□□□□ -2.09
VPS39Q96JC1 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.98□□□□□ -2.09
VPS39Q96JC1 MIR5089-201ENST00000580047 84 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.98□□□□□ -2.09
VPS39Q96JC1 BNIP3P25-201ENST00000596023 559 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 AC012507.3-201ENST00000603556 477 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 Z82243.1-201ENST00000609432 473 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS39Q96JC1 AC104073.3-201ENST00000610942 955 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 AL132822.1-201ENST00000617063 513 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 uc_338.20-201ENST00000621563 178 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 AC007792.1-201ENST00000623023 402 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 AC022418.1-201ENST00000624118 445 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 Z69720.2-201ENST00000624755 279 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS39Q96JC1 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
VPS39Q96JC1 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS39Q96JC1 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.97□□□□□ -2.09
VPS39Q96JC1 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
VPS39Q96JC1 RNU6-212P-201ENST00000362642 104 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 RNU6-428P-201ENST00000362942 107 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 MIR1262-201ENST00000408276 93 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 RN7SKP32-201ENST00000410167 303 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 RNA5SP489-201ENST00000410986 109 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 USP9YP18-201ENST00000425912 695 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 C8orf59P1-201ENST00000429930 303 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.97□□□□□ -2.09
VPS39Q96JC1 RPL7P54-201ENST00000438336 674 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.97□□□□□ -2.09
VPS39Q96JC1 MTCYBP40-201ENST00000509390 1135 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.97□□□□□ -2.09
VPS39Q96JC1 SNORA25.17-201ENST00000517184 124 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS39Q96JC1 AC104383.1-201ENST00000530297 370 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.97□□□□□ -2.09
VPS39Q96JC1 AL137161.1-201ENST00000532231 390 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS39Q96JC1 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS39Q96JC1 ANP32BP3-201ENST00000559213 706 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 MIR3935-201ENST00000583472 104 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.97□□□□□ -2.09
VPS39Q96JC1 AC092954.2-201ENST00000609103 430 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 AC017083.3-201ENST00000609955 700 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 AC004908.3-201ENST00000610248 625 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 AC124864.2-201ENST00000624736 186 ntBASIC1.97□□□□□ -2.09
VPS39Q96JC1 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
VPS39Q96JC1 Y_RNA.255-201ENST00000364581 97 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 Y_RNA.372-201ENST00000365599 102 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 RNU6-1042P-201ENST00000384204 107 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 RNU6-517P-201ENST00000384362 110 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 SNORA67.3-201ENST00000384366 140 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 RNU6-434P-201ENST00000384376 107 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 SNORD14D-201ENST00000384390 87 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 MIR29B2-201ENST00000385055 81 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 RN7SKP284-201ENST00000411002 343 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 TOMM20P4-201ENST00000427861 435 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 HMGN2P3-201ENST00000433603 273 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 HMGN2P5-201ENST00000436882 273 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS39Q96JC1 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS39Q96JC1 AC107401.1-201ENST00000503426 685 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 ANXA2P1-201ENST00000505539 926 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 AC105313.1-201ENST00000509121 353 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
VPS39Q96JC1 PTP4A1P4-201ENST00000512479 322 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 RNA5SP401-201ENST00000515920 127 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 Y_RNA.704-201ENST00000516851 102 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS39Q96JC1 AC022880.1-201ENST00000534017 973 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 OR11H5P-201ENST00000554039 926 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 AL118558.2-201ENST00000556294 238 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.96□□□□□ -2.1
VPS39Q96JC1 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.96□□□□□ -2.1
VPS39Q96JC1 AC004223.2-201ENST00000590309 544 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.96□□□□□ -2.1
VPS39Q96JC1 AF250324.2-201ENST00000608299 610 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 HULC.1-201ENST00000612720 240 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 AC005609.4-201ENST00000625071 447 ntBASIC1.96□□□□□ -2.1
VPS39Q96JC1 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.95□□□□□ -2.1
VPS39Q96JC1 RNU5E-7P-201ENST00000365290 117 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 RNU11-3P-201ENST00000391111 133 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 MTCO3P40-201ENST00000392516 676 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 SRIP3-201ENST00000413200 219 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 SNORD56-201ENST00000413522 71 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 EIF4EP2-201ENST00000422816 654 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 BX510359.4-201ENST00000423750 193 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.95□□□□□ -2.1
VPS39Q96JC1 AL121601.2-201ENST00000438019 707 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.95□□□□□ -2.1
VPS39Q96JC1 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.95□□□□□ -2.1
VPS39Q96JC1 AC009646.1-201ENST00000510455 318 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 SNORA40.12-201ENST00000516329 111 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 RNU2-44P-201ENST00000516795 194 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 AK6P1-201ENST00000540219 478 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 138.2 ms