Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
USP48Q86UV5 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USP48Q86UV5 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP48Q86UV5 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC4.16□□□□□ -1.74
USP48Q86UV5 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.16□□□□□ -1.74
USP48Q86UV5 AP002088.1-201ENST00000382740 395 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 AC023141.4-201ENST00000412031 328 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.16□□□□□ -1.74
USP48Q86UV5 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.16□□□□□ -1.74
USP48Q86UV5 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.16□□□□□ -1.74
USP48Q86UV5 OR2AQ1P-201ENST00000451972 200 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.16□□□□□ -1.74
USP48Q86UV5 RPL27AP5-201ENST00000469428 449 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 SNORA31.1-201ENST00000515993 133 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 RNU6-1143P-201ENST00000516125 104 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 SNORA31.5-201ENST00000516190 133 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 RNY3P15-201ENST00000516297 97 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 Y_RNA.706-201ENST00000516933 99 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 AC091144.1-201ENST00000519573 138 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 CKS1BP7-201ENST00000522230 235 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.16□□□□□ -1.74
USP48Q86UV5 MIR4644-201ENST00000579929 84 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 AC022149.2-201ENST00000621061 203 ntBASIC4.16□□□□□ -1.74
USP48Q86UV5 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.16□□□□□ -1.74
USP48Q86UV5 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.16□□□□□ -1.74
USP48Q86UV5 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.16□□□□□ -1.74
USP48Q86UV5 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.16□□□□□ -1.74
USP48Q86UV5 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
USP48Q86UV5 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC4.16□□□□□ -1.74
USP48Q86UV5 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.15□□□□□ -1.74
USP48Q86UV5 AC058791.1-201ENST00000608412 3198 ntBASIC4.15□□□□□ -1.74
USP48Q86UV5 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
USP48Q86UV5 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.15□□□□□ -1.74
USP48Q86UV5 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
USP48Q86UV5 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
USP48Q86UV5 Y_RNA.152-201ENST00000363578 100 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 SNORD32A-201ENST00000364805 84 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 RNU6-487P-201ENST00000365430 104 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 RNU6-1286P-201ENST00000383871 107 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 Y_RNA.405-201ENST00000383979 100 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 Y_RNA.451-201ENST00000384200 100 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 Y_RNA.524-201ENST00000384564 100 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 Y_RNA.561-201ENST00000384694 100 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 MIR544A-201ENST00000384855 91 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 MIR190B-201ENST00000401119 79 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 AL031121.1-201ENST00000406553 254 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 Y_RNA.592-201ENST00000410274 109 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 RNU6-1077P-201ENST00000410506 102 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 MTCO3P19-201ENST00000415864 321 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 AL358453.1-201ENST00000422522 250 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 RPL23AP95-201ENST00000426806 265 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.15□□□□□ -1.75
USP48Q86UV5 MTCO3P8-201ENST00000453691 755 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 AC026333.2-201ENST00000542164 106 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.15□□□□□ -1.75
USP48Q86UV5 RPL23AP78-201ENST00000599928 470 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 AL033523.1-201ENST00000605153 153 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 SCARNA4-201ENST00000629045 128 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 AC091152.2-201ENST00000591628 2569 ntBASIC4.15□□□□□ -1.75
USP48Q86UV5 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
USP48Q86UV5 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
USP48Q86UV5 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.14□□□□□ -1.75
USP48Q86UV5 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
USP48Q86UV5 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC4.14□□□□□ -1.75
USP48Q86UV5 RNU6-142P-201ENST00000384019 107 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 RNU6-301P-201ENST00000384277 107 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 RNA5SP252-201ENST00000391131 119 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 AC017079.2-201ENST00000416102 485 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 PTGES3P4-201ENST00000426243 356 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 AC025750.2-201ENST00000442609 450 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 AL353705.4-201ENST00000449661 238 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 SNORD127-201ENST00000458892 86 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 AC010401.1-201ENST00000463867 348 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 RNU2-53P-201ENST00000516257 147 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC4.14□□□□□ -1.75
USP48Q86UV5 MRPS36P4-201ENST00000534436 298 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.14□□□□□ -1.75
USP48Q86UV5 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC4.14□□□□□ -1.75
USP48Q86UV5 RAC1P9-201ENST00000604990 392 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 AC243829.7-201ENST00000633081 225 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 AC007256.1-201ENST00000392253 2765 ntBASIC4.14□□□□□ -1.75
USP48Q86UV5 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.14□□□□□ -1.75
USP48Q86UV5 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
USP48Q86UV5 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
USP48Q86UV5 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.14□□□□□ -1.75
USP48Q86UV5 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP48Q86UV5 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP48Q86UV5 Z83843.1-201ENST00000604070 3685 ntBASIC4.13□□□□□ -1.75
USP48Q86UV5 Y_RNA.64-201ENST00000362845 102 ntBASIC4.13□□□□□ -1.75
USP48Q86UV5 Y_RNA.276-201ENST00000364732 109 ntBASIC4.13□□□□□ -1.75
USP48Q86UV5 Y_RNA.376-201ENST00000365638 108 ntBASIC4.13□□□□□ -1.75
USP48Q86UV5 Y_RNA.483-201ENST00000384380 101 ntBASIC4.13□□□□□ -1.75
USP48Q86UV5 U3.39-201ENST00000408569 239 ntBASIC4.13□□□□□ -1.75
USP48Q86UV5 RNA5SP390-201ENST00000410191 113 ntBASIC4.13□□□□□ -1.75
USP48Q86UV5 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.13□□□□□ -1.75
USP48Q86UV5 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC4.13□□□□□ -1.75
USP48Q86UV5 snoU13.30-201ENST00000458951 104 ntBASIC4.13□□□□□ -1.75
USP48Q86UV5 RNU6-1132P-201ENST00000459214 107 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms