Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC126124.2-201ENST00000413542 321 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 OR2AH1P-201ENST00000425717 928 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 RPS26P47-201ENST00000427219 348 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 AL445584.1-201ENST00000431451 330 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 GEMIN8P3-201ENST00000445417 720 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 RPL39P34-201ENST00000477141 156 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 MLLT10P2-201ENST00000506434 249 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 SNORA70.12-201ENST00000516084 153 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 RNU7-115P-201ENST00000516433 55 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 RNU6-158P-201ENST00000517104 100 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 RNU6-709P-201ENST00000517257 104 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 CKS1BP7-201ENST00000522230 235 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 MIR3200-201ENST00000580767 85 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 AC011471.1-201ENST00000585766 187 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 AC090132.2-201ENST00000615881 347 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.99□□□□□ -1.77
COL8A1P27658 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.99□□□□□ -1.77
COL8A1P27658 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL8A1P27658 AC118273.1-201ENST00000525324 3006 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC3.99□□□□□ -1.77
COL8A1P27658 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL8A1P27658 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL8A1P27658 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
COL8A1P27658 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.98□□□□□ -1.77
COL8A1P27658 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.98□□□□□ -1.77
COL8A1P27658 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL8A1P27658 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL8A1P27658 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL8A1P27658 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC3.98□□□□□ -1.77
COL8A1P27658 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL8A1P27658 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL8A1P27658 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.98□□□□□ -1.77
COL8A1P27658 MIR494-201ENST00000349529 81 ntBASIC3.98□□□□□ -1.77
COL8A1P27658 Y_RNA.323-201ENST00000365157 109 ntBASIC3.98□□□□□ -1.77
COL8A1P27658 TOMM22P2-201ENST00000430735 237 ntBASIC3.98□□□□□ -1.77
COL8A1P27658 RPL35AP21-201ENST00000437667 333 ntBASIC3.98□□□□□ -1.77
COL8A1P27658 RN7SKP46-201ENST00000515942 234 ntBASIC3.98□□□□□ -1.77
COL8A1P27658 RNU6-521P-201ENST00000516663 105 ntBASIC3.98□□□□□ -1.77
COL8A1P27658 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.98□□□□□ -1.77
COL8A1P27658 AL022345.2-201ENST00000606307 135 ntBASIC3.98□□□□□ -1.77
COL8A1P27658 MIR2052-201ENST00000636055 55 ntBASIC3.98□□□□□ -1.77
COL8A1P27658 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL8A1P27658 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
COL8A1P27658 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC3.98□□□□□ -1.77
COL8A1P27658 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL8A1P27658 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC3.98□□□□□ -1.77
COL8A1P27658 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC3.98□□□□□ -1.77
COL8A1P27658 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL8A1P27658 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC3.97□□□□□ -1.77
COL8A1P27658 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL8A1P27658 Y_RNA.221-201ENST00000364248 96 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 RNU6-484P-201ENST00000384016 107 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 RNU6-1124P-201ENST00000384169 107 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 Y_RNA.528-201ENST00000384575 108 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 Y_RNA.549-201ENST00000384657 102 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 Y_RNA.587-201ENST00000391210 103 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 RNA5SP496-201ENST00000391240 109 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 Z98745.1-201ENST00000402553 494 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 U3.32-201ENST00000408116 212 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 MIR1263-201ENST00000408324 86 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 AL356095.1-201ENST00000417217 199 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 RPL27AP8-201ENST00000424277 446 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 AC019205.3-201ENST00000424573 156 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.97□□□□□ -1.77
COL8A1P27658 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.97□□□□□ -1.77
COL8A1P27658 AC090515.1-201ENST00000465295 476 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 AC021205.2-201ENST00000480069 347 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 AC117454.1-201ENST00000491120 168 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.97□□□□□ -1.77
COL8A1P27658 SNORA31.23-201ENST00000517219 133 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.97□□□□□ -1.77
COL8A1P27658 IGKV1-22-201ENST00000524313 326 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 TRAV8-5-201ENST00000537369 341 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.97□□□□□ -1.77
COL8A1P27658 RN7SL703P-201ENST00000578485 302 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 AC053481.4-201ENST00000583164 216 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 U6.115-201ENST00000636045 103 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 ADAM3A-203ENST00000461344 2157 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC3.97□□□□□ -1.77
COL8A1P27658 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.97□□□□□ -1.77
COL8A1P27658 AC106871.1-201ENST00000568324 3102 ntBASIC3.97□□□□□ -1.77
COL8A1P27658 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
COL8A1P27658 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL8A1P27658 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.77
COL8A1P27658 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.96□□□□□ -1.77
COL8A1P27658 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL8A1P27658 AC005332.5-201ENST00000591222 2919 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.96□□□□□ -1.78
COL8A1P27658 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
COL8A1P27658 RNU1-100P-201ENST00000365255 165 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 AP002088.1-201ENST00000382740 395 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 MIR491-201ENST00000384877 84 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 U3.26-201ENST00000391236 204 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 MIR1271-201ENST00000408537 86 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 RN7SKP101-201ENST00000411376 320 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 AL135786.1-201ENST00000415892 214 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 AL590383.1-201ENST00000428602 75 ntBASIC3.96□□□□□ -1.78
COL8A1P27658 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.96□□□□□ -1.78
COL8A1P27658 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms