Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 RNA5SP125-201ENST00000364843 120 ntBASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 RNU6-1323P-201ENST00000384025 107 ntBASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 MIR548B-201ENST00000385247 97 ntBASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 MIR493-201ENST00000385254 89 ntBASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 MIR298-201ENST00000401212 88 ntBASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 AC068287.1-201ENST00000430283 295 ntBASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 AC011753.3-201ENST00000443436 406 ntBASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 AC073264.2-201ENST00000448886 166 ntBASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 AL691482.1-201ENST00000453255 87 ntBASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 MIR378J-201ENST00000611988 109 ntBASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 MAPK10-286ENST00000641208 8747 ntBASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
PCDHB3Q9Y5E6 AC107068.1-201ENST00000563286 4218 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 SNORD114-7-201ENST00000362520 77 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 SNORA73.1-201ENST00000363107 205 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 MIR1263-201ENST00000408324 86 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 RPL23AP82-202ENST00000427528 469 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 NDUFB4P6-201ENST00000436819 366 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 H2AFZP5-201ENST00000446960 382 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 RPL23AP7-203ENST00000449021 469 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 CENPBD1P1-201ENST00000464061 469 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 AC108751.2-201ENST00000469993 231 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 RPS29P20-201ENST00000489592 171 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 RPL23AP54-201ENST00000495129 419 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 RN7SKP12-201ENST00000516275 143 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 RNU6-1337P-201ENST00000516525 95 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 AP006289.1-201ENST00000538089 277 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 AC021739.1-201ENST00000559631 174 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 MIR6780A-201ENST00000615089 68 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 AP000346.3-201ENST00000622821 210 ntBASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
PCDHB3Q9Y5E6 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 Y_RNA.52-201ENST00000362760 96 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 RNU1-32P-201ENST00000363937 159 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 RNA5SP113-201ENST00000410486 84 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 RPS3AP1-201ENST00000413190 320 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 RPL23AP56-201ENST00000460778 453 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 RN7SL517P-201ENST00000462240 305 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 RN7SL459P-201ENST00000481078 302 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 RN7SKP43-201ENST00000516173 320 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 RNU6-970P-201ENST00000516312 107 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 RNU2-44P-201ENST00000516795 194 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 AL049861.1-201ENST00000603130 150 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 AL391358.1-201ENST00000605342 190 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 AC112484.5-201ENST00000624189 228 ntBASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.72□□□□□ -1.65
PCDHB3Q9Y5E6 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
PCDHB3Q9Y5E6 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
PCDHB3Q9Y5E6 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
PCDHB3Q9Y5E6 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 RNU6-600P-201ENST00000362524 99 ntBASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 RNU6-674P-201ENST00000363831 107 ntBASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 U3.15-201ENST00000365398 212 ntBASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 SNORA62-201ENST00000365493 153 ntBASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 DYNLT3P1-201ENST00000378574 347 ntBASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 Y_RNA.528-201ENST00000384575 108 ntBASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 Y_RNA.549-201ENST00000384657 102 ntBASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC4.71□□□□□ -1.66
PCDHB3Q9Y5E6 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms