Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIR4662B-201ENST00000579498 81 ntBASIC4.89□□□□□ -1.63
VPS9D1Q9Y2B5 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS9D1Q9Y2B5 AC107294.3-201ENST00000609211 526 ntBASIC4.89□□□□□ -1.63
VPS9D1Q9Y2B5 MIR7155-201ENST00000615925 56 ntBASIC4.89□□□□□ -1.63
VPS9D1Q9Y2B5 MIR4662A-201ENST00000637499 67 ntBASIC4.89□□□□□ -1.63
VPS9D1Q9Y2B5 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
VPS9D1Q9Y2B5 DHX9P1-201ENST00000436565 3076 ntBASIC4.89□□□□□ -1.63
VPS9D1Q9Y2B5 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.89□□□□□ -1.63
VPS9D1Q9Y2B5 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS9D1Q9Y2B5 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 AL356292.1-201ENST00000283110 373 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 SNORA27.1-201ENST00000362604 124 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 Y_RNA.73-201ENST00000362910 113 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 Y_RNA.265-201ENST00000364677 108 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 RNA5SP428-201ENST00000365129 132 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 RNU6-24P-201ENST00000384440 107 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 AC244098.2-201ENST00000422068 99 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 RPL34P20-201ENST00000442771 351 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 AC005921.1-201ENST00000510589 286 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 RNU6-1282P-201ENST00000516735 96 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 ACA59.2-201ENST00000517061 156 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 AC105137.2-201ENST00000569073 466 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 CYCSP40-201ENST00000575927 294 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 AL591926.8-201ENST00000616876 211 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 MIR6730-201ENST00000622213 67 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 AC002064.3-201ENST00000623448 346 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 AC139713.2-215ENST00000641428 5037 ntBASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS9D1Q9Y2B5 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 Y_RNA.290-201ENST00000364879 114 ntBASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 AL117342.1-201ENST00000404861 406 ntBASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 BX284632.1-201ENST00000478218 541 ntBASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 RN7SKP46-201ENST00000515942 234 ntBASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 MIR4691-201ENST00000583764 85 ntBASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS9D1Q9Y2B5 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 AL672167.1-204ENST00000641875 3017 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 SCN1A-220ENST00000641603 12506 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 RNA5SP305-201ENST00000362665 119 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 Y_RNA.66-201ENST00000362862 102 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 U8.4-201ENST00000363626 134 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 RNU6-1305P-201ENST00000364353 104 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 RNU6-1292P-201ENST00000383856 107 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 RN7SKP213-201ENST00000410746 298 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 AL353705.1-201ENST00000433468 480 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 NDUFB1P1-201ENST00000435191 180 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 AL645939.1-201ENST00000453429 797 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 RPS27AP10-201ENST00000496103 208 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 AC140172.1-201ENST00000502928 141 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 SCARNA23-201ENST00000516060 130 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 MIR3691-201ENST00000578066 90 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 AC007229.1-201ENST00000590455 412 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 AC006065.5-201ENST00000623427 349 ntBASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
VPS9D1Q9Y2B5 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms