Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU1-91P-201ENST00000364746 163 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 RNU4-53P-201ENST00000410828 140 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 RNU6-293P-201ENST00000411259 106 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.08□□□□□ -2.08
DDX28Q9NUL7 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.08□□□□□ -2.08
DDX28Q9NUL7 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.08□□□□□ -2.08
DDX28Q9NUL7 AC243964.1-201ENST00000441814 261 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 AC055731.1-201ENST00000474387 401 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 AC104435.1-201ENST00000483483 166 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 RPL9P6-201ENST00000492764 598 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.08□□□□□ -2.08
DDX28Q9NUL7 CCDC34P1-201ENST00000507441 517 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.08□□□□□ -2.08
DDX28Q9NUL7 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.08□□□□□ -2.08
DDX28Q9NUL7 AC090115.3-201ENST00000553218 849 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.08□□□□□ -2.08
DDX28Q9NUL7 BNIP3P16-201ENST00000589779 534 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.08□□□□□ -2.08
DDX28Q9NUL7 AL670379.2-201ENST00000604983 252 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.08□□□□□ -2.08
DDX28Q9NUL7 AC098657.3-201ENST00000620434 263 ntBASIC2.08□□□□□ -2.08
DDX28Q9NUL7 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
DDX28Q9NUL7 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AP006437.1-201ENST00000641440 3685 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 RNU6-428P-201ENST00000362942 107 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 RNU1-23P-201ENST00000363361 144 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 RNU6-82P-201ENST00000363970 107 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 RNU6-336P-201ENST00000364891 107 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 SNORA25B-201ENST00000365507 128 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 SNORA69-201ENST00000383895 132 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 RPS29P13-201ENST00000402041 169 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AL591034.2-201ENST00000402839 359 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AL121601.2-201ENST00000438019 707 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AL353705.4-201ENST00000449661 238 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AC008549.1-201ENST00000512900 643 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 RNA5SP401-201ENST00000515920 127 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 RN7SKP256-201ENST00000517201 314 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AC115990.1-201ENST00000526957 301 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.07□□□□□ -2.08
DDX28Q9NUL7 OR11H5P-201ENST00000554039 926 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.07□□□□□ -2.08
DDX28Q9NUL7 MIR3126-201ENST00000577443 74 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AC103987.3-201ENST00000582071 292 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AC025165.5-201ENST00000602802 578 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 SDR42E1P4-201ENST00000620894 481 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AL359880.1-201ENST00000621879 266 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 AC090517.3-201ENST00000625170 141 ntBASIC2.07□□□□□ -2.08
DDX28Q9NUL7 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.07□□□□□ -2.08
DDX28Q9NUL7 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.06□□□□□ -2.08
DDX28Q9NUL7 RNA5SP138-201ENST00000365098 114 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 XGY1-201ENST00000381172 446 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 MIR29B2-201ENST00000385055 81 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 SNORD37.1-201ENST00000390968 65 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AL117339.3-201ENST00000418733 162 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 USP9YP18-201ENST00000425912 695 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.06□□□□□ -2.08
DDX28Q9NUL7 MTND1P1-201ENST00000445453 368 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AL031274.1-201ENST00000450334 232 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AL353752.1-201ENST00000454946 260 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.06□□□□□ -2.08
DDX28Q9NUL7 RNU6-717P-201ENST00000459076 104 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 MTCO3P38-201ENST00000468910 766 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AC018868.1-201ENST00000491307 315 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AC091885.1-201ENST00000506658 268 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AC234781.5-201ENST00000508429 271 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AC026436.1-201ENST00000510537 270 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 RNU6-237P-201ENST00000515985 71 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 RNU1-41P-201ENST00000516161 162 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 RNU1-48P-201ENST00000516400 162 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 SNORA31.25-201ENST00000517242 134 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.06□□□□□ -2.08
DDX28Q9NUL7 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.06□□□□□ -2.08
DDX28Q9NUL7 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
DDX28Q9NUL7 MIR4448-201ENST00000584360 86 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 RNU6-85P-201ENST00000605989 107 ntBASIC2.06□□□□□ -2.08
DDX28Q9NUL7 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
DDX28Q9NUL7 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
DDX28Q9NUL7 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.05□□□□□ -2.08
DDX28Q9NUL7 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.05□□□□□ -2.08
DDX28Q9NUL7 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
DDX28Q9NUL7 RNU6-1285P-201ENST00000363480 105 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 RNU6-1274P-201ENST00000384557 107 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 SNORA67.4-201ENST00000384688 142 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 RNA5SP219-201ENST00000390940 113 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 CALM2P3-201ENST00000400429 449 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 SNORA3.2-201ENST00000408221 125 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 RNA5SP270-201ENST00000411361 118 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 EDDM3CP-201ENST00000415977 425 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 AC016907.1-201ENST00000419483 435 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.05□□□□□ -2.08
DDX28Q9NUL7 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.05□□□□□ -2.08
DDX28Q9NUL7 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms