Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 RAC1P2-201ENST00000511164 579 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 RNA5SP208-201ENST00000516156 78 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 RNU5B-3P-201ENST00000516601 115 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AC144568.1-201ENST00000520139 137 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AC024153.1-201ENST00000603103 365 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AL355877.2-201ENST00000603670 358 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 U3.45-201ENST00000607547 219 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AC091903.1-201ENST00000624322 454 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AC093908.1-201ENST00000623125 8092 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 RNA5SP119-201ENST00000362715 117 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 RNU6-78P-201ENST00000362897 107 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 SNORD27-201ENST00000363981 72 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 SNORD46.1-201ENST00000364139 104 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 RNY1-201ENST00000364228 113 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 Y_RNA.274-201ENST00000364714 101 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 RNA5SP51-201ENST00000364750 119 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 MIR218-2-201ENST00000385006 110 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 RNA5SP424-201ENST00000390988 115 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 AL591034.2-201ENST00000402839 359 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 AL513475.1-201ENST00000406602 315 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 FTH1P15-201ENST00000406984 280 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 RNU2-25P-201ENST00000411041 191 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 AC002075.2-201ENST00000425207 252 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 AC011742.1-201ENST00000431448 434 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 PRSS3P4-201ENST00000453323 162 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 AC091179.1-201ENST00000461606 579 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 AC106707.2-201ENST00000484182 374 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 MRPL42P6-201ENST00000486397 371 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 TRBV12-2-201ENST00000489763 344 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 SNORA43.2-201ENST00000516652 128 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 MIR5696-201ENST00000578474 85 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 AL137849.1-201ENST00000604767 169 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 AL121917.1-203ENST00000605534 577 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 AC069200.1-201ENST00000609511 323 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
CLIP3Q96DZ5 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
CLIP3Q96DZ5 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 SNORA63.1-201ENST00000362493 131 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 Y_RNA.150-201ENST00000363562 102 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 RNU6-595P-201ENST00000363944 107 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 RNU6-19P-201ENST00000384718 107 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 MIR215-201ENST00000384858 110 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 PCNPP3-201ENST00000393579 471 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 MIR548H3-201ENST00000408771 118 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 MTCO3P19-201ENST00000415864 321 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 PTGES3P4-201ENST00000426243 356 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 AC009414.1-201ENST00000427200 443 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 RAC1P5-201ENST00000512182 576 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 ACA59.2-201ENST00000517061 156 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 AC090877.1-201ENST00000561418 344 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 AC091152.3-201ENST00000604227 325 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 BRDTP1-201ENST00000605735 677 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 U4.7-201ENST00000638126 106 ntBASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CLIP3Q96DZ5 ZNF299P-201ENST00000406845 1804 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 AC058791.1-201ENST00000608412 3198 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 MIR335-201ENST00000362173 94 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 snoU2_19.2-201ENST00000363024 80 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 Y_RNA.237-201ENST00000364439 102 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 Y_RNA.592-201ENST00000410274 109 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 RNA5SP44-201ENST00000410446 133 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 AC093578.1-201ENST00000415219 368 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 AL139109.1-201ENST00000455491 297 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 RNU6-377P-201ENST00000515965 102 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 CR383656.8-201ENST00000549046 145 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 RPS29P30-201ENST00000600975 111 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 AC073410.2-201ENST00000603240 332 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 AC107294.3-201ENST00000609211 526 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 AC004792.1-201ENST00000614523 137 ntBASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CLIP3Q96DZ5 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms