Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.82□□□□□ -1.64
SH3RF1Q7Z6J0 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 RNU6-778P-201ENST00000363269 103 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 TOMM22P1-201ENST00000418578 312 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 RNU7-197P-201ENST00000458836 62 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 U8.19-201ENST00000459095 133 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 AC091179.3-201ENST00000474761 144 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 RNU6-168P-201ENST00000516189 101 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 MIR5582-201ENST00000579697 68 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 AL356575.1-201ENST00000603008 283 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 AC011603.4-201ENST00000611325 277 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 MIR3658-201ENST00000636291 56 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 U2.21-201ENST00000637295 81 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 MFSD8-242ENST00000641690 4199 ntBASIC4.81□□□□□ -1.64
SH3RF1Q7Z6J0 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 MAPK10-253ENST00000641010 4072 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 Y_RNA.172-201ENST00000363765 102 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 RNA5SP175-201ENST00000364275 119 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 Y_RNA.293-201ENST00000364908 93 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 SNORA22-201ENST00000383907 134 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 SNORA8.3-201ENST00000384679 139 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 FTH1P15-201ENST00000406984 280 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 RPL21P66-201ENST00000426566 466 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 HMGB1P37-201ENST00000439613 609 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 AL500522.2-201ENST00000448562 343 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 RPL26P9-201ENST00000457466 433 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 AC007215.1-201ENST00000464893 276 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 RN7SKP179-201ENST00000516126 217 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 AC015813.4-201ENST00000610469 179 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
SH3RF1Q7Z6J0 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 SCN1A-220ENST00000641603 12506 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 RNA5SP124-201ENST00000362739 110 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 U8.7-201ENST00000364940 136 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 RNU6-1280P-201ENST00000365211 107 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 RNU6-1279P-201ENST00000383917 103 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 RNU6-217P-201ENST00000384164 104 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 MIR93-201ENST00000385024 80 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 MIR513A2-201ENST00000385249 127 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 RNU6-1197P-201ENST00000391183 107 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 SNORA11.2-201ENST00000408318 127 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 AC096649.2-201ENST00000416186 393 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 AL157831.1-201ENST00000426134 473 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 RPL39P29-201ENST00000447779 157 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 AL133547.1-201ENST00000448546 220 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 HMGB3P8-201ENST00000449709 577 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 FCF1P8-201ENST00000510322 597 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 RNU6-1282P-201ENST00000516735 96 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 SNORA31.23-201ENST00000517219 133 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 CKS1BP7-201ENST00000522230 235 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 AC013791.1-201ENST00000616619 62 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 MIR3529-201ENST00000637713 78 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 AC106871.1-201ENST00000568324 3102 ntBASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.79□□□□□ -1.64
SH3RF1Q7Z6J0 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 RNU6-727P-201ENST00000363592 107 ntBASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 SNORA18.3-201ENST00000384122 132 ntBASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 MIR449B-201ENST00000384995 97 ntBASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 SNORA26.3-201ENST00000391119 136 ntBASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 U3.40-201ENST00000408706 208 ntBASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 BPY2DP-201ENST00000422208 265 ntBASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 AC019205.3-201ENST00000424573 156 ntBASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.78□□□□□ -1.64
SH3RF1Q7Z6J0 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms