Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.69□□□□□ -1.98
COL28A1Q2UY09 SNORD56.1-201ENST00000362913 68 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 RNU6-428P-201ENST00000362942 107 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 RNU6-1252P-201ENST00000363054 104 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 Y_RNA.226-201ENST00000364337 114 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 SNORD116-11-201ENST00000383882 92 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AL590004.2-201ENST00000404787 371 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 SNAP23P1-201ENST00000433229 246 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 FABP5P14-201ENST00000437273 393 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 RPS15AP7-201ENST00000439294 405 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 RPL22P13-201ENST00000493291 347 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AK3P2-201ENST00000507976 429 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AC008526.1-201ENST00000509149 338 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 RNA5SP112-201ENST00000515937 99 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 SCOCP1-201ENST00000554676 349 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AC103996.1-201ENST00000555468 102 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AL356157.2-201ENST00000605122 111 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AC024581.2-201ENST00000619986 252 ntBASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
COL28A1Q2UY09 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL28A1Q2UY09 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL28A1Q2UY09 RNU6-562P-201ENST00000362731 107 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 RNU6-486P-201ENST00000363116 107 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 Y_RNA.338-201ENST00000365320 114 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 SNORA9.2-201ENST00000365361 133 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 RNU6-1245P-201ENST00000411130 106 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.67□□□□□ -1.98
COL28A1Q2UY09 CYCSP48-201ENST00000417124 323 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AC098614.3-201ENST00000438957 440 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AC243964.1-201ENST00000441814 261 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AC096745.1-201ENST00000509945 370 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.67□□□□□ -1.98
COL28A1Q2UY09 ELOCP31-201ENST00000540463 467 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.67□□□□□ -1.98
COL28A1Q2UY09 MIR548S-201ENST00000581352 82 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 MIR3616-201ENST00000584070 92 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 MIR4765-201ENST00000585007 77 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AC090617.7-201ENST00000623952 126 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL28A1Q2UY09 AC002543.1-201ENST00000299783 1954 ntBASIC2.67□□□□□ -1.98
COL28A1Q2UY09 MTND4P23-201ENST00000447723 1363 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 SNORD114-19-201ENST00000363072 75 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 Y_RNA.303-201ENST00000364998 94 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 RNU6-1328P-201ENST00000410938 106 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 RNU6-293P-201ENST00000411259 106 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.66□□□□□ -1.98
COL28A1Q2UY09 AL451074.5-201ENST00000415894 435 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 AC009296.1-201ENST00000443146 155 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 snoU13.14-201ENST00000459372 104 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 RPL36AP48-201ENST00000485521 314 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 MTCO1P29-201ENST00000496868 288 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 SNORA31.18-201ENST00000517043 134 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 AC243972.3-201ENST00000539655 198 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.66□□□□□ -1.98
COL28A1Q2UY09 TRAV32-201ENST00000553993 340 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 AC027176.1-201ENST00000560204 514 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 AL353997.5-201ENST00000618886 171 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.66□□□□□ -1.98
COL28A1Q2UY09 AL355596.1-201ENST00000565399 3996 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 AC026241.1-201ENST00000517873 2142 ntBASIC2.66□□□□□ -1.98
COL28A1Q2UY09 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.66□□□□□ -1.98
COL28A1Q2UY09 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.65□□□□□ -1.98
COL28A1Q2UY09 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.65□□□□□ -1.98
COL28A1Q2UY09 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL28A1Q2UY09 SNORA72.1-201ENST00000363485 129 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 RNU6-461P-201ENST00000364195 107 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 RNU6-1222P-201ENST00000384615 107 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL28A1Q2UY09 RNU2-23P-201ENST00000410545 195 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.65□□□□□ -1.99
COL28A1Q2UY09 AC097463.2-201ENST00000421074 142 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.65□□□□□ -1.99
COL28A1Q2UY09 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL28A1Q2UY09 MTATP6P23-201ENST00000440153 476 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 Z96811.1-201ENST00000445880 108 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 HMGN1P12-201ENST00000499125 195 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 RNU6-566P-201ENST00000516790 107 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 RNU6-1088P-201ENST00000516850 104 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms