Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AC243829.3-201ENST00000622177 108 ntBASIC0.68□□□□□ -2.3
NUP98P52948 Y_RNA.332-201ENST00000365271 113 ntBASIC0.67□□□□□ -2.3
NUP98P52948 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC0.67□□□□□ -2.3
NUP98P52948 AC245047.4-201ENST00000433189 144 ntBASIC0.67□□□□□ -2.3
NUP98P52948 MTND1P3-201ENST00000484956 952 ntBASIC0.67□□□□□ -2.3
NUP98P52948 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.67□□□□□ -2.3
NUP98P52948 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.67□□□□□ -2.3
NUP98P52948 AP001542.1-201ENST00000591314 200 ntBASIC0.67□□□□□ -2.3
NUP98P52948 AL365204.3-201ENST00000612448 685 ntBASIC0.67□□□□□ -2.3
NUP98P52948 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
NUP98P52948 Y_RNA.68-201ENST00000362881 102 ntBASIC0.66□□□□□ -2.3
NUP98P52948 RNU6-23P-201ENST00000363283 107 ntBASIC0.66□□□□□ -2.3
NUP98P52948 MIR1197-201ENST00000408818 88 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AL358176.2-201ENST00000425769 204 ntBASIC0.66□□□□□ -2.3
NUP98P52948 RNU6-953P-201ENST00000459154 107 ntBASIC0.66□□□□□ -2.3
NUP98P52948 RNU6-496P-201ENST00000516145 99 ntBASIC0.66□□□□□ -2.3
NUP98P52948 RNY4P37-201ENST00000516225 96 ntBASIC0.66□□□□□ -2.3
NUP98P52948 RNU6-150P-201ENST00000516237 95 ntBASIC0.66□□□□□ -2.3
NUP98P52948 RNU6-64P-201ENST00000517119 105 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.66□□□□□ -2.3
NUP98P52948 VN1R87P-201ENST00000596706 487 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AP003465.2-201ENST00000602571 373 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AC022022.2-201ENST00000602989 360 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AP000860.1-201ENST00000605250 559 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AP000654.2-201ENST00000605633 586 ntBASIC0.66□□□□□ -2.3
NUP98P52948 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
NUP98P52948 AC018926.1-201ENST00000616335 435 ntBASIC0.66□□□□□ -2.3
NUP98P52948 ELL2P3-201ENST00000457883 1602 ntBASIC0.66□□□□□ -2.3
NUP98P52948 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.66□□□□□ -2.3
NUP98P52948 RNU6-1274P-201ENST00000384557 107 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AC016831.2-201ENST00000417179 352 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AL953862.1-201ENST00000423016 168 ntBASIC0.66□□□□□ -2.3
NUP98P52948 TIMM9P1-201ENST00000436122 256 ntBASIC0.66□□□□□ -2.3
NUP98P52948 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC0.66□□□□□ -2.3
NUP98P52948 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC0.66□□□□□ -2.3
NUP98P52948 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.66□□□□□ -2.3
NUP98P52948 MTND2P4-201ENST00000445034 1004 ntBASIC0.66□□□□□ -2.3
NUP98P52948 HSPE1P13-201ENST00000451143 297 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AC003071.1-201ENST00000451219 789 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC0.66□□□□□ -2.3
NUP98P52948 RNU5F-2P-201ENST00000516066 82 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.66□□□□□ -2.3
NUP98P52948 AC019288.1-201ENST00000557918 224 ntBASIC0.66□□□□□ -2.3
NUP98P52948 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.66□□□□□ -2.3
NUP98P52948 CYP3A52P-201ENST00000563326 91 ntBASIC0.66□□□□□ -2.3
NUP98P52948 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC0.66□□□□□ -2.3
NUP98P52948 BNIP3P31-201ENST00000604515 566 ntBASIC0.66□□□□□ -2.3
NUP98P52948 RNU5B-4P-201ENST00000363508 111 ntBASIC0.65□□□□□ -2.31
NUP98P52948 RNU6-1019P-201ENST00000364424 107 ntBASIC0.65□□□□□ -2.31
NUP98P52948 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.65□□□□□ -2.31
NUP98P52948 MIR194-1-201ENST00000384892 85 ntBASIC0.65□□□□□ -2.31
NUP98P52948 Y_RNA.623-201ENST00000411128 95 ntBASIC0.65□□□□□ -2.31
NUP98P52948 AC069282.1-201ENST00000411911 526 ntBASIC0.65□□□□□ -2.31
NUP98P52948 DYNLT3P2-201ENST00000442517 295 ntBASIC0.65□□□□□ -2.31
NUP98P52948 MTND1P16-201ENST00000465177 898 ntBASIC0.65□□□□□ -2.31
NUP98P52948 AC104629.1-201ENST00000494226 508 ntBASIC0.65□□□□□ -2.31
NUP98P52948 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC0.65□□□□□ -2.31
NUP98P52948 AP006587.4-201ENST00000526053 529 ntBASIC0.65□□□□□ -2.31
NUP98P52948 AL356057.1-201ENST00000533798 831 ntBASIC0.65□□□□□ -2.31
NUP98P52948 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC0.65□□□□□ -2.31
NUP98P52948 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.65□□□□□ -2.31
NUP98P52948 HMGB1P33-201ENST00000563485 527 ntBASIC0.65□□□□□ -2.31
NUP98P52948 AC092325.1-201ENST00000566449 554 ntBASIC0.65□□□□□ -2.31
NUP98P52948 AL365434.2-201ENST00000607979 234 ntBASIC0.65□□□□□ -2.31
NUP98P52948 U6.42-201ENST00000618440 107 ntBASIC0.65□□□□□ -2.31
NUP98P52948 SNORD3E-201ENST00000362899 217 ntBASIC0.64□□□□□ -2.31
NUP98P52948 Y_RNA.85-201ENST00000363014 111 ntBASIC0.64□□□□□ -2.31
NUP98P52948 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC0.64□□□□□ -2.31
NUP98P52948 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.64□□□□□ -2.31
NUP98P52948 MTCO2P25-201ENST00000447065 681 ntBASIC0.64□□□□□ -2.31
NUP98P52948 SCARNA16.2-201ENST00000516520 172 ntBASIC0.64□□□□□ -2.31
NUP98P52948 RNU5A-4P-201ENST00000516588 111 ntBASIC0.64□□□□□ -2.31
NUP98P52948 Y_RNA.689-201ENST00000516589 107 ntBASIC0.64□□□□□ -2.31
NUP98P52948 LRRC6P1-201ENST00000532188 885 ntBASIC0.64□□□□□ -2.31
NUP98P52948 AC090186.1-201ENST00000605991 572 ntBASIC0.64□□□□□ -2.31
NUP98P52948 MIR15A-201ENST00000607334 83 ntBASIC0.64□□□□□ -2.31
NUP98P52948 AC022893.3-201ENST00000607665 437 ntBASIC0.64□□□□□ -2.31
NUP98P52948 AL355816.2-201ENST00000610049 647 ntBASIC0.64□□□□□ -2.31
NUP98P52948 RMST_4.1-201ENST00000616886 107 ntBASIC0.64□□□□□ -2.31
NUP98P52948 OR4G3P-201ENST00000633500 913 ntBASIC0.64□□□□□ -2.31
NUP98P52948 MTND5P42-201ENST00000637720 498 ntBASIC0.64□□□□□ -2.31
NUP98P52948 AC006927.2-201ENST00000639256 389 ntBASIC0.64□□□□□ -2.31
NUP98P52948 RNU6-853P-201ENST00000364306 107 ntBASIC0.64□□□□□ -2.31
NUP98P52948 RNU6-438P-201ENST00000365561 103 ntBASIC0.64□□□□□ -2.31
NUP98P52948 VTRNA1-3-201ENST00000365645 89 ntBASIC0.64□□□□□ -2.31
NUP98P52948 RNU6-395P-201ENST00000365662 106 ntBASIC0.64□□□□□ -2.31
NUP98P52948 SMIM11P1-201ENST00000369586 178 ntBASIC0.64□□□□□ -2.31
NUP98P52948 RNA5SP511-201ENST00000410487 115 ntBASIC0.64□□□□□ -2.31
NUP98P52948 USP9YP21-201ENST00000420603 432 ntBASIC0.64□□□□□ -2.31
NUP98P52948 AL590556.1-201ENST00000423231 483 ntBASIC0.64□□□□□ -2.31
NUP98P52948 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.64□□□□□ -2.31
NUP98P52948 HSPE1P9-201ENST00000440046 311 ntBASIC0.64□□□□□ -2.31
NUP98P52948 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
NUP98P52948 AC114982.1-201ENST00000469402 321 ntBASIC0.64□□□□□ -2.31
NUP98P52948 HMGB1P30-201ENST00000492455 606 ntBASIC0.64□□□□□ -2.31
NUP98P52948 AC134050.1-201ENST00000495088 933 ntBASIC0.64□□□□□ -2.31
NUP98P52948 SUMO2P5-201ENST00000506790 245 ntBASIC0.64□□□□□ -2.31
NUP98P52948 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC0.64□□□□□ -2.31
NUP98P52948 Y_RNA.681-201ENST00000516445 113 ntBASIC0.64□□□□□ -2.31
NUP98P52948 RNU6-334P-201ENST00000517072 102 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms