Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MIR3670-2-201ENST00000582974 65 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 MIR3670-1-201ENST00000584160 65 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 MIR5002-201ENST00000584713 97 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 MIR3670-3-201ENST00000584855 65 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
HOXC9P31274 OR1M4P-201ENST00000589199 287 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 MIR3670-4-201ENST00000612260 65 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
HOXC9P31274 AC099654.14-201ENST00000638599 341 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 AC121333.1-201ENST00000567488 2709 ntBASIC2.75□□□□□ -1.97
HOXC9P31274 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HOXC9P31274 SNORD113-7-201ENST00000363762 77 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 Y_RNA.530-201ENST00000384587 101 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 MIR450B-201ENST00000401182 78 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.74□□□□□ -1.97
HOXC9P31274 AC096649.2-201ENST00000416186 393 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 RPL7P37-201ENST00000425095 738 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 AL513185.2-201ENST00000425543 193 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXC9P31274 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXC9P31274 NDUFA5P4-201ENST00000436704 385 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 AC012308.1-201ENST00000451232 178 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 RNU7-138P-201ENST00000459479 64 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 AC008628.2-201ENST00000502605 298 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 GZMAP1-201ENST00000503054 631 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 MTCO2P30-201ENST00000503662 364 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXC9P31274 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXC9P31274 RNU6-1332P-201ENST00000516666 104 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXC9P31274 PSMA3P-201ENST00000555485 635 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 AC011712.1-201ENST00000588959 234 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 AC091152.3-201ENST00000604227 325 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HOXC9P31274 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.74□□□□□ -1.97
HOXC9P31274 ZNF519P1-201ENST00000449011 1626 ntBASIC2.74□□□□□ -1.97
HOXC9P31274 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXC9P31274 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXC9P31274 RNU6-78P-201ENST00000362897 107 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 Y_RNA.414-201ENST00000384011 101 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 SNORD116-20-201ENST00000384529 92 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 MIR147B-201ENST00000390185 80 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 AL133475.1-201ENST00000404414 305 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.73□□□□□ -1.97
HOXC9P31274 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXC9P31274 RPL39P40-201ENST00000445481 146 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 UBBP3-201ENST00000445497 241 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 RPL7P12-201ENST00000446719 750 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 RNU7-66P-201ENST00000459469 62 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 AC107626.1-201ENST00000471084 183 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.73□□□□□ -1.97
HOXC9P31274 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXC9P31274 SNORD19.2-201ENST00000516978 73 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 AC004486.1-201ENST00000546846 233 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXC9P31274 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXC9P31274 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.73□□□□□ -1.97
HOXC9P31274 AC011494.1-201ENST00000596454 237 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXC9P31274 AC019159.1-201ENST00000605094 187 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 AC009248.2-201ENST00000619826 254 ntBASIC2.73□□□□□ -1.97
HOXC9P31274 RNU6-942P-201ENST00000363002 107 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 RNU6-254P-201ENST00000363377 107 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 RNU6-831P-201ENST00000384548 107 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 FGF7P8-201ENST00000402994 292 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 RNA5SP181-201ENST00000410246 98 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 SNORD56-201ENST00000413522 71 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXC9P31274 AL365400.1-201ENST00000431854 640 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXC9P31274 AP000852.1-201ENST00000472460 573 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXC9P31274 CKS1BP2-201ENST00000497342 240 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 RNU4-49P-201ENST00000516080 140 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 SNORA43.2-201ENST00000516652 128 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 AC087854.1-201ENST00000519706 414 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 AC104576.1-201ENST00000524225 88 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 FAM157A-202ENST00000615155 405 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 AC097372.5-201ENST00000623665 376 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.72□□□□□ -1.97
HOXC9P31274 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.71□□□□□ -1.97
HOXC9P31274 AC026241.1-201ENST00000517873 2142 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
HOXC9P31274 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
HOXC9P31274 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.71□□□□□ -1.98
HOXC9P31274 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXC9P31274 CBX3P1-201ENST00000325243 554 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 RNU6-527P-201ENST00000363425 104 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 SNORD56.5-201ENST00000364281 72 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 FO393413.1-201ENST00000402892 195 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 RNU6-1140P-201ENST00000410517 106 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 AL096701.2-201ENST00000416920 238 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXC9P31274 RPL21P111-201ENST00000418453 477 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 AL358075.3-201ENST00000426289 226 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms