Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 RNA5SP502-201ENST00000362694 119 ntBASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 snoU2_19.2-201ENST00000363024 80 ntBASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 RNU6-209P-201ENST00000384118 107 ntBASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 AC074117.2-201ENST00000417130 397 ntBASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 AC016700.2-201ENST00000446011 156 ntBASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 U8.22-201ENST00000459141 133 ntBASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 AC020895.1-201ENST00000595362 272 ntBASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 AC019159.1-201ENST00000605094 187 ntBASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 AC098479.1-201ENST00000609225 154 ntBASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 CUL1P1-201ENST00000509510 2425 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 RNU6-137P-201ENST00000363680 108 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 Y_RNA.237-201ENST00000364439 102 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 SNORD32A-201ENST00000364805 84 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 MIR32-201ENST00000384965 70 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 MIR513A2-201ENST00000385249 127 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 Y_RNA.581-201ENST00000391017 97 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 RNU1-139P-201ENST00000391307 165 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 RPL30P1-201ENST00000488676 339 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 AC136932.1-201ENST00000574771 208 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 AL110115.1-201ENST00000614396 364 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 MIR4727-201ENST00000622232 55 ntBASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC87Q9NVE4 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 AC004944.1-201ENST00000517807 3059 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 Y_RNA.117-201ENST00000363294 101 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 Y_RNA.143-201ENST00000363520 106 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 Y_RNA.785-201ENST00000384290 109 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 RNU6-843P-201ENST00000384454 104 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 MIR215-201ENST00000384858 110 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 SNORD58.1-201ENST00000391313 66 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 AL079342.1-201ENST00000401460 267 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 MTHFD2P2-201ENST00000407725 247 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 AC007969.2-201ENST00000441891 191 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 HMGB3P17-201ENST00000504195 649 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 PHBP14-201ENST00000512887 367 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 RNU6-1114P-201ENST00000516022 107 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 RNU6-1198P-201ENST00000516904 67 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 RNU6-182P-201ENST00000516970 105 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 LARP7P3-201ENST00000579888 337 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 MIR4659A-201ENST00000580269 81 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 AC009779.6-201ENST00000603972 165 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 AP003355.3-201ENST00000623465 114 ntBASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC87Q9NVE4 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 HAUS6P2-201ENST00000433254 2404 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 SNORD56.1-201ENST00000362913 68 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 RNA5SP374-201ENST00000362939 125 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 SNORD63-201ENST00000384262 68 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 YPEL5P1-201ENST00000419731 367 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 EIF1P2-201ENST00000428233 350 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 SNRPGP5-201ENST00000456003 220 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 AC087477.1-201ENST00000465747 340 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 RPS4XP13-201ENST00000483219 789 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 RNU1-61P-201ENST00000516107 151 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 RNU6-1338P-201ENST00000516328 91 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 RNU5B-3P-201ENST00000516601 115 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 IGKV2-26-201ENST00000518305 343 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 AL451007.1-201ENST00000595491 289 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 BX284668.6-201ENST00000606899 438 ntBASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC87Q9NVE4 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 AL035425.3-201ENST00000564206 4996 ntBASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms