Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 AL079305.1-201ENST00000623159 3008 ntBASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 SNORD6-201ENST00000365444 73 ntBASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 MIR1298-201ENST00000408783 112 ntBASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 RN7SKP61-201ENST00000410642 295 ntBASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 RPS29P7-201ENST00000439662 171 ntBASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 UBL5P4-201ENST00000562584 236 ntBASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 MIR4643-201ENST00000577473 78 ntBASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 AC244505.7-201ENST00000599675 272 ntBASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 SNORD113-5-201ENST00000607261 78 ntBASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 ADAM3A-203ENST00000461344 2157 ntBASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.7□□□□□ -1.82
PTCHD1Q96NR3 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 Y_RNA.150-201ENST00000363562 102 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 RNU6-137P-201ENST00000363680 108 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 Y_RNA.180-201ENST00000363867 113 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 Y_RNA.270-201ENST00000364693 104 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 RNU1-64P-201ENST00000365443 163 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 RNU6-213P-201ENST00000384051 104 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 RNU6-281P-201ENST00000384212 103 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 SNORA36A-201ENST00000384221 132 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 MIR487A-201ENST00000385009 80 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 RNU6-159P-201ENST00000391080 106 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 SNORA53-201ENST00000391141 249 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 MIR548M-201ENST00000408260 86 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 RNU5A-5P-201ENST00000411054 116 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 AC017079.2-201ENST00000416102 485 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 BPY2DP-201ENST00000422208 265 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 HMGB1P37-201ENST00000439613 609 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 AC012308.1-201ENST00000451232 178 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 HMGN2P16-201ENST00000456802 261 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 RNA5SP310-201ENST00000459084 116 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 SNRPGP3-201ENST00000469405 227 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 RPS26P15-201ENST00000488067 348 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 SEPT14P8-201ENST00000508026 178 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 RNU6-58P-201ENST00000517143 103 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 CKS1BP7-201ENST00000522230 235 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 AL137100.2-201ENST00000555786 315 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 AC021739.1-201ENST00000559631 174 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 AL138963.2-201ENST00000605137 226 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 AC073308.1-201ENST00000623696 305 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 AC127459.3-201ENST00000624328 466 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 MIR3529-201ENST00000637713 78 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 AF127577.6-201ENST00000623352 2191 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 AC018555.1-201ENST00000567548 1980 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 CUL1P1-201ENST00000509510 2425 ntBASIC3.69□□□□□ -1.82
PTCHD1Q96NR3 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 Y_RNA.83-201ENST00000363005 113 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 RNU4-30P-201ENST00000410245 143 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 RNU6-1001P-201ENST00000411265 100 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 AP001025.1-201ENST00000486139 332 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 AC006445.2-201ENST00000510061 472 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 RNU1-61P-201ENST00000516107 151 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 RNU6-1198P-201ENST00000516904 67 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 YPEL5P3-201ENST00000547227 352 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 HIGD1AP1-201ENST00000550979 275 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 AL391261.3-201ENST00000557194 520 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 AC106785.1-201ENST00000565935 262 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 RN7SL703P-201ENST00000578485 302 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 AC024220.1-201ENST00000603675 484 ntBASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.68□□□□□ -1.82
PTCHD1Q96NR3 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms