Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC091932.3-201ENST00000624223 323 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 MIR331-201ENST00000362302 94 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 Y_RNA.101-201ENST00000363154 102 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 RNU1-132P-201ENST00000364300 164 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 RNU6-740P-201ENST00000364734 105 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 SNORD87-201ENST00000364849 89 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 RNU6-514P-201ENST00000384208 107 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 RPL19P1-201ENST00000411635 428 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AC004866.1-201ENST00000411748 78 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 EIF4EP4-201ENST00000424916 578 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AL445584.1-201ENST00000431451 330 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AC011998.1-201ENST00000433403 117 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 RPL23AP52-201ENST00000439311 478 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 TPT1P12-201ENST00000448968 492 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 snoU13.1-201ENST00000459157 104 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AC006445.1-201ENST00000491925 405 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 VWA8P1-201ENST00000510889 176 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 RNU6-966P-201ENST00000516479 104 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 IGLV3-26-201ENST00000520756 302 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 RPL21P9-201ENST00000556149 474 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AC103810.1-201ENST00000579873 453 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AC025946.2-201ENST00000603398 234 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AC113403.1-201ENST00000604910 193 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AC022441.3-201ENST00000605737 136 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 TCL6_2.1-201ENST00000615162 119 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 uc_338.13-201ENST00000618243 179 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AC127459.3-201ENST00000624328 466 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AC018529.3-201ENST00000624212 2254 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.37□□□□□ -1.87
CCDC140Q96MF4 LINC01355-201ENST00000566551 5444 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AC006504.1-201ENST00000562493 3666 ntBASIC3.37□□□□□ -1.87
CCDC140Q96MF4 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC140Q96MF4 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC140Q96MF4 RNA5SP447-201ENST00000363749 119 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC140Q96MF4 Y_RNA.418-201ENST00000384029 102 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 ELOCP19-201ENST00000411919 318 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 AC091390.1-201ENST00000433904 331 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC140Q96MF4 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC140Q96MF4 PHBP16-201ENST00000446318 950 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 ABCF2P2-201ENST00000450549 296 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 AC146507.2-201ENST00000460608 476 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 RN7SL98P-201ENST00000462271 300 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 AC026241.1-201ENST00000517873 2142 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC140Q96MF4 AC026470.2-201ENST00000561492 181 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC140Q96MF4 MIR4284-201ENST00000578924 81 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC140Q96MF4 MIR8058-201ENST00000615737 89 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 AC092628.2-201ENST00000622492 339 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 AC140479.6-201ENST00000633535 357 ntBASIC3.36□□□□□ -1.87
CCDC140Q96MF4 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC140Q96MF4 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC140Q96MF4 AC092593.1-201ENST00000515413 1815 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 MIR410-201ENST00000362222 80 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 Y_RNA.76-201ENST00000362931 109 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 RNA5SP175-201ENST00000364275 119 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 Y_RNA.274-201ENST00000364714 101 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 Y_RNA.297-201ENST00000364950 91 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 RNU6-213P-201ENST00000384051 104 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 SNORD66.1-201ENST00000391230 76 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 SNORA11F-201ENST00000408237 128 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms