Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 HMGB3P2-201ENST00000411913 584 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 RPL23AP93-201ENST00000440847 484 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 AC073910.1-201ENST00000445047 438 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 U8.22-201ENST00000459141 133 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 AC145146.1-201ENST00000496370 254 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 SCARNA22-201ENST00000503991 125 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 AC110768.1-201ENST00000509222 400 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 SCARNA3-201ENST00000517097 143 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 AC131281.1-201ENST00000522984 164 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 AC008033.2-201ENST00000542626 177 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 EIF4A1P12-201ENST00000551910 141 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 BX322639.1-202ENST00000423987 2213 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 AL079305.1-201ENST00000623159 3008 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 RNU4-15P-201ENST00000362613 141 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 RNU6-1301P-201ENST00000362724 104 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 Y_RNA.176-201ENST00000363815 109 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 RNU6-879P-201ENST00000364328 108 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 Y_RNA.276-201ENST00000364732 109 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 SNORA71.2-201ENST00000364941 134 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 AP002088.1-201ENST00000382740 395 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 SNORD21-201ENST00000383953 95 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 RNU6-245P-201ENST00000384020 107 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 SNORD78.2-201ENST00000391076 69 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 SNORA48.8-201ENST00000391324 134 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 U6atac.2-201ENST00000408644 118 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 COX6B1P1-201ENST00000415962 213 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 AL132765.1-201ENST00000434165 553 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 AC073901.1-201ENST00000462471 408 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 AC006483.1-201ENST00000487308 313 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 MRPS35P2-201ENST00000508242 191 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 AC026470.2-201ENST00000561492 181 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 MIR5695-201ENST00000579717 85 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 SNRPGP20-201ENST00000604477 205 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 AL591424.2-201ENST00000617023 128 ntBASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLRN3Q8NCR9 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 snoU2_19.1-201ENST00000362361 80 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 RNA5SP123-201ENST00000363244 119 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 Y_RNA.144-201ENST00000363521 113 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 Y_RNA.471-201ENST00000384312 102 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 RNA5SP213-201ENST00000391031 106 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 RPS26P8-201ENST00000393490 348 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 HLFP1-201ENST00000402375 499 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 WARS2P1-201ENST00000429678 537 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 AC112220.1-201ENST00000434628 355 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 RPS12P18-201ENST00000442381 270 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 AC093023.1-201ENST00000547375 507 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 TGIF1P1-201ENST00000558095 802 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 AC008269.2-201ENST00000561915 1105 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 UBL5P4-201ENST00000562584 236 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 AC136624.4-201ENST00000573044 370 ntBASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.18□□□□□ -1.9
CLRN3Q8NCR9 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 RNU1-75P-201ENST00000347264 129 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 Y_RNA.210-201ENST00000364161 110 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 RNA5SP175-201ENST00000364275 119 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 RNU6-378P-201ENST00000384324 107 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 SNORA46.1-201ENST00000391069 153 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 MIR1302-3-201ENST00000408128 138 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 AC126124.2-201ENST00000413542 321 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 BX679664.1-201ENST00000434429 253 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 PHBP16-201ENST00000446318 950 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms