Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.64□□□□□ -1.99
MSH2P43246 RBBP8P1-201ENST00000449447 1844 ntBASIC2.64□□□□□ -1.99
MSH2P43246 Y_RNA.100-201ENST00000363141 102 ntBASIC2.64□□□□□ -1.99
MSH2P43246 Y_RNA.530-201ENST00000384587 101 ntBASIC2.64□□□□□ -1.99
MSH2P43246 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.64□□□□□ -1.99
MSH2P43246 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.64□□□□□ -1.99
MSH2P43246 AC074117.2-201ENST00000417130 397 ntBASIC2.64□□□□□ -1.99
MSH2P43246 RPL30P16-201ENST00000419341 429 ntBASIC2.64□□□□□ -1.99
MSH2P43246 USP9YP28-201ENST00000435142 589 ntBASIC2.64□□□□□ -1.99
MSH2P43246 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.64□□□□□ -1.99
MSH2P43246 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.64□□□□□ -1.99
MSH2P43246 AL135938.1-201ENST00000443141 297 ntBASIC2.64□□□□□ -1.99
MSH2P43246 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.64□□□□□ -1.99
MSH2P43246 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.64□□□□□ -1.99
MSH2P43246 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.64□□□□□ -1.99
MSH2P43246 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.64□□□□□ -1.99
MSH2P43246 SNORA31.23-201ENST00000517219 133 ntBASIC2.64□□□□□ -1.99
MSH2P43246 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC2.64□□□□□ -1.99
MSH2P43246 RNU6-323P-201ENST00000521915 107 ntBASIC2.64□□□□□ -1.99
MSH2P43246 AF235103.2-201ENST00000525753 346 ntBASIC2.64□□□□□ -1.99
MSH2P43246 COPS8P3-201ENST00000526024 482 ntBASIC2.64□□□□□ -1.99
MSH2P43246 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.64□□□□□ -1.99
MSH2P43246 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.64□□□□□ -1.99
MSH2P43246 MIR5092-201ENST00000583139 88 ntBASIC2.64□□□□□ -1.99
MSH2P43246 AC060780.3-201ENST00000589464 80 ntBASIC2.64□□□□□ -1.99
MSH2P43246 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.64□□□□□ -1.99
MSH2P43246 AC024581.2-201ENST00000619986 252 ntBASIC2.64□□□□□ -1.99
MSH2P43246 AC100810.6-201ENST00000638068 285 ntBASIC2.64□□□□□ -1.99
MSH2P43246 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
MSH2P43246 HAUS6P2-201ENST00000433254 2404 ntBASIC2.64□□□□□ -1.99
MSH2P43246 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
MSH2P43246 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
MSH2P43246 RNU1-112P-201ENST00000364401 164 ntBASIC2.63□□□□□ -1.99
MSH2P43246 RNU6-487P-201ENST00000365430 104 ntBASIC2.63□□□□□ -1.99
MSH2P43246 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
MSH2P43246 RNU1-52P-201ENST00000384190 164 ntBASIC2.63□□□□□ -1.99
MSH2P43246 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
MSH2P43246 RNA5SP21-201ENST00000410917 96 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AL117339.3-201ENST00000418733 162 ntBASIC2.63□□□□□ -1.99
MSH2P43246 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.63□□□□□ -1.99
MSH2P43246 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.63□□□□□ -1.99
MSH2P43246 NUP35P1-201ENST00000422734 947 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AC087499.2-201ENST00000432861 149 ntBASIC2.63□□□□□ -1.99
MSH2P43246 NDUFA5P4-201ENST00000436704 385 ntBASIC2.63□□□□□ -1.99
MSH2P43246 RBMX2P4-201ENST00000441256 376 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AC011816.1-201ENST00000441346 546 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AC025750.2-201ENST00000442609 450 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AC012308.1-201ENST00000451232 178 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AC013470.1-201ENST00000453438 462 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AL139109.1-201ENST00000455491 297 ntBASIC2.63□□□□□ -1.99
MSH2P43246 RNU7-66P-201ENST00000459469 62 ntBASIC2.63□□□□□ -1.99
MSH2P43246 RNU6-377P-201ENST00000515965 102 ntBASIC2.63□□□□□ -1.99
MSH2P43246 SNORA31.11-201ENST00000516528 139 ntBASIC2.63□□□□□ -1.99
MSH2P43246 RNA5SP367-201ENST00000516557 118 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AC079598.5-201ENST00000547460 117 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.63□□□□□ -1.99
MSH2P43246 PSMA3P-201ENST00000555485 635 ntBASIC2.63□□□□□ -1.99
MSH2P43246 MIR4446-201ENST00000578505 67 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AL049779.4-201ENST00000604500 156 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AC021646.1-201ENST00000605469 484 ntBASIC2.63□□□□□ -1.99
MSH2P43246 AL121917.1-203ENST00000605534 577 ntBASIC2.63□□□□□ -1.99
MSH2P43246 FAM157A-202ENST00000615155 405 ntBASIC2.63□□□□□ -1.99
MSH2P43246 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.63□□□□□ -1.99
MSH2P43246 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
MSH2P43246 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.63□□□□□ -1.99
MSH2P43246 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
MSH2P43246 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
MSH2P43246 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
MSH2P43246 RNU6-254P-201ENST00000363377 107 ntBASIC2.62□□□□□ -1.99
MSH2P43246 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
MSH2P43246 MIR450B-201ENST00000401182 78 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AL162578.1-201ENST00000406202 378 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AC009161.1-201ENST00000417306 376 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AC003685.2-201ENST00000422795 395 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AC107083.1-201ENST00000439643 279 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.62□□□□□ -1.99
MSH2P43246 AL031274.1-201ENST00000450334 232 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AP001025.1-201ENST00000486139 332 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AC140059.1-201ENST00000489238 361 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AC018437.1-201ENST00000492214 406 ntBASIC2.62□□□□□ -1.99
MSH2P43246 RPL23AP49-201ENST00000492925 468 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AC097462.2-201ENST00000504623 481 ntBASIC2.62□□□□□ -1.99
MSH2P43246 RNU6-1314P-201ENST00000517139 104 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.62□□□□□ -1.99
MSH2P43246 AP005597.4-201ENST00000526762 229 ntBASIC2.62□□□□□ -1.99
MSH2P43246 CBX3P7-201ENST00000532876 502 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AC025423.5-201ENST00000550230 219 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.62□□□□□ -1.99
MSH2P43246 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.62□□□□□ -1.99
MSH2P43246 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.62□□□□□ -1.99
MSH2P43246 MIR7106-201ENST00000612419 65 ntBASIC2.62□□□□□ -1.99
MSH2P43246 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.62□□□□□ -1.99
MSH2P43246 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.62□□□□□ -1.99
MSH2P43246 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.62□□□□□ -1.99
MSH2P43246 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
MSH2P43246 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
MSH2P43246 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
MSH2P43246 SNORD56.1-201ENST00000362913 68 ntBASIC2.61□□□□□ -1.99
MSH2P43246 RNU6-428P-201ENST00000362942 107 ntBASIC2.61□□□□□ -1.99
MSH2P43246 SNORD113-7-201ENST00000363762 77 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 139.7 ms