Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.29□□□□□ -1.72
MSX1P28360 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSX1P28360 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MSX1P28360 ZNF702P-202ENST00000434269 1966 ntBASIC4.29□□□□□ -1.72
MSX1P28360 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSX1P28360 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.29□□□□□ -1.72
MSX1P28360 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSX1P28360 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSX1P28360 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSX1P28360 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
MSX1P28360 AL590240.1-201ENST00000334118 313 ntBASIC4.28□□□□□ -1.72
MSX1P28360 RNU6-768P-201ENST00000384683 107 ntBASIC4.28□□□□□ -1.72
MSX1P28360 RPL36AP10-201ENST00000421785 322 ntBASIC4.28□□□□□ -1.72
MSX1P28360 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC4.28□□□□□ -1.72
MSX1P28360 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC4.28□□□□□ -1.72
MSX1P28360 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.28□□□□□ -1.72
MSX1P28360 HMGN2P21-201ENST00000447764 270 ntBASIC4.28□□□□□ -1.72
MSX1P28360 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.28□□□□□ -1.72
MSX1P28360 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.28□□□□□ -1.72
MSX1P28360 HSPE1P5-201ENST00000561489 272 ntBASIC4.28□□□□□ -1.72
MSX1P28360 MIR3923-201ENST00000579521 83 ntBASIC4.28□□□□□ -1.72
MSX1P28360 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC4.28□□□□□ -1.72
MSX1P28360 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.28□□□□□ -1.72
MSX1P28360 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSX1P28360 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSX1P28360 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.28□□□□□ -1.72
MSX1P28360 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC4.28□□□□□ -1.72
MSX1P28360 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.28□□□□□ -1.72
MSX1P28360 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX1P28360 AC010300.1-201ENST00000600671 5134 ntBASIC4.27□□□□□ -1.73
MSX1P28360 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.27□□□□□ -1.73
MSX1P28360 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX1P28360 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX1P28360 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.27□□□□□ -1.73
MSX1P28360 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX1P28360 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.27□□□□□ -1.73
MSX1P28360 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
MSX1P28360 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX1P28360 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
MSX1P28360 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.27□□□□□ -1.73
MSX1P28360 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
MSX1P28360 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
MSX1P28360 RNU6-1205P-201ENST00000363625 106 ntBASIC4.27□□□□□ -1.73
MSX1P28360 SNORA7.2-201ENST00000364446 145 ntBASIC4.27□□□□□ -1.73
MSX1P28360 Y_RNA.243-201ENST00000364481 109 ntBASIC4.27□□□□□ -1.73
MSX1P28360 MIR129-1-201ENST00000384972 72 ntBASIC4.27□□□□□ -1.73
MSX1P28360 RNU6-1228P-201ENST00000391014 107 ntBASIC4.27□□□□□ -1.73
MSX1P28360 SDHCP2-201ENST00000398565 501 ntBASIC4.27□□□□□ -1.73
MSX1P28360 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.27□□□□□ -1.73
MSX1P28360 AL592291.1-201ENST00000403830 352 ntBASIC4.27□□□□□ -1.73
MSX1P28360 RNU6-855P-201ENST00000410395 104 ntBASIC4.27□□□□□ -1.73
MSX1P28360 RPL23AP1-201ENST00000428990 471 ntBASIC4.27□□□□□ -1.73
MSX1P28360 AIG1P1-201ENST00000503376 148 ntBASIC4.27□□□□□ -1.73
MSX1P28360 RNA5SP497-201ENST00000516081 97 ntBASIC4.27□□□□□ -1.73
MSX1P28360 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.27□□□□□ -1.73
MSX1P28360 MIR1254-2-201ENST00000579553 63 ntBASIC4.27□□□□□ -1.73
MSX1P28360 AL356218.2-201ENST00000605264 187 ntBASIC4.27□□□□□ -1.73
MSX1P28360 AL445567.2-201ENST00000618935 498 ntBASIC4.27□□□□□ -1.73
MSX1P28360 MFSD8-242ENST00000641690 4199 ntBASIC4.27□□□□□ -1.73
MSX1P28360 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX1P28360 AC002543.1-201ENST00000299783 1954 ntBASIC4.27□□□□□ -1.73
MSX1P28360 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX1P28360 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
MSX1P28360 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSX1P28360 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSX1P28360 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSX1P28360 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.26□□□□□ -1.73
MSX1P28360 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSX1P28360 SNORA71.2-201ENST00000364941 134 ntBASIC4.26□□□□□ -1.73
MSX1P28360 Y_RNA.341-201ENST00000365341 102 ntBASIC4.26□□□□□ -1.73
MSX1P28360 Y_RNA.521-201ENST00000384560 114 ntBASIC4.26□□□□□ -1.73
MSX1P28360 Y_RNA.525-201ENST00000384570 113 ntBASIC4.26□□□□□ -1.73
MSX1P28360 MT-TT-201ENST00000387460 66 ntBASIC4.26□□□□□ -1.73
MSX1P28360 RPL21P17-201ENST00000397467 475 ntBASIC4.26□□□□□ -1.73
MSX1P28360 CBX3P9-201ENST00000402326 552 ntBASIC4.26□□□□□ -1.73
MSX1P28360 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.26□□□□□ -1.73
MSX1P28360 RPS27P1-201ENST00000450552 247 ntBASIC4.26□□□□□ -1.73
MSX1P28360 RPL36AP41-201ENST00000493820 306 ntBASIC4.26□□□□□ -1.73
MSX1P28360 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.26□□□□□ -1.73
MSX1P28360 ACA59.2-201ENST00000517061 156 ntBASIC4.26□□□□□ -1.73
MSX1P28360 AC021739.1-201ENST00000559631 174 ntBASIC4.26□□□□□ -1.73
MSX1P28360 AC023043.3-201ENST00000593113 385 ntBASIC4.26□□□□□ -1.73
MSX1P28360 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.26□□□□□ -1.73
MSX1P28360 AL773545.4-201ENST00000637262 310 ntBASIC4.26□□□□□ -1.73
MSX1P28360 AL513478.4-201ENST00000641636 310 ntBASIC4.26□□□□□ -1.73
MSX1P28360 Z73965.1-201ENST00000623412 2297 ntBASIC4.26□□□□□ -1.73
MSX1P28360 ZNF137P-201ENST00000456718 1920 ntBASIC4.26□□□□□ -1.73
MSX1P28360 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSX1P28360 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSX1P28360 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
MSX1P28360 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
MSX1P28360 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSX1P28360 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSX1P28360 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.25□□□□□ -1.73
MSX1P28360 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
MSX1P28360 RNA5SP502-201ENST00000362694 119 ntBASIC4.25□□□□□ -1.73
MSX1P28360 RNU1-83P-201ENST00000363426 164 ntBASIC4.25□□□□□ -1.73
MSX1P28360 RNA5SP28-201ENST00000363841 119 ntBASIC4.25□□□□□ -1.73
MSX1P28360 SNORD113.2-201ENST00000364166 89 ntBASIC4.25□□□□□ -1.73
MSX1P28360 Y_RNA.229-201ENST00000364347 113 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 180.9 ms