Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.99□□□□□ -2.09
SDC1P18827 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.99□□□□□ -2.09
SDC1P18827 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SDC1P18827 AC007969.2-201ENST00000441891 191 ntBASIC1.99□□□□□ -2.09
SDC1P18827 RNU7-167P-201ENST00000459160 62 ntBASIC1.99□□□□□ -2.09
SDC1P18827 AC083798.1-201ENST00000472671 131 ntBASIC1.99□□□□□ -2.09
SDC1P18827 AP001893.2-201ENST00000526949 202 ntBASIC1.99□□□□□ -2.09
SDC1P18827 AC022880.1-201ENST00000534017 973 ntBASIC1.99□□□□□ -2.09
SDC1P18827 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.99□□□□□ -2.09
SDC1P18827 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.99□□□□□ -2.09
SDC1P18827 PSMA3P-201ENST00000555485 635 ntBASIC1.99□□□□□ -2.09
SDC1P18827 AC009127.3-201ENST00000570531 403 ntBASIC1.99□□□□□ -2.09
SDC1P18827 RPL30P11-203ENST00000598995 310 ntBASIC1.99□□□□□ -2.09
SDC1P18827 MIR6840-201ENST00000611937 71 ntBASIC1.99□□□□□ -2.09
SDC1P18827 AL359880.1-201ENST00000621879 266 ntBASIC1.99□□□□□ -2.09
SDC1P18827 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.99□□□□□ -2.09
SDC1P18827 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
SDC1P18827 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SDC1P18827 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.98□□□□□ -2.09
SDC1P18827 Y_RNA.41-201ENST00000362646 102 ntBASIC1.98□□□□□ -2.09
SDC1P18827 RNU6-105P-201ENST00000363909 104 ntBASIC1.98□□□□□ -2.09
SDC1P18827 RNU6-1032P-201ENST00000384100 107 ntBASIC1.98□□□□□ -2.09
SDC1P18827 SNORA51.11-201ENST00000384442 131 ntBASIC1.98□□□□□ -2.09
SDC1P18827 MIR634-201ENST00000385208 97 ntBASIC1.98□□□□□ -2.09
SDC1P18827 SNORA11.4-201ENST00000408823 129 ntBASIC1.98□□□□□ -2.09
SDC1P18827 RNA5SP390-201ENST00000410191 113 ntBASIC1.98□□□□□ -2.09
SDC1P18827 RNU2-23P-201ENST00000410545 195 ntBASIC1.98□□□□□ -2.09
SDC1P18827 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.98□□□□□ -2.09
SDC1P18827 VN1R108P-201ENST00000431580 830 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.98□□□□□ -2.09
SDC1P18827 USP9YP8-201ENST00000441913 500 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AL139109.1-201ENST00000455491 297 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AC087884.1-201ENST00000469738 328 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AC117503.1-201ENST00000472241 394 ntBASIC1.98□□□□□ -2.09
SDC1P18827 RPL30P12-201ENST00000474666 353 ntBASIC1.98□□□□□ -2.09
SDC1P18827 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.98□□□□□ -2.09
SDC1P18827 RNU2-53P-201ENST00000516257 147 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC1.98□□□□□ -2.09
SDC1P18827 AC109329.1-201ENST00000518744 317 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AP005902.1-201ENST00000521358 186 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AL512310.1-201ENST00000548639 172 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AC090115.3-201ENST00000553218 849 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AC026464.5-201ENST00000562497 722 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AC093249.1-201ENST00000567049 203 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AC009314.1-201ENST00000603871 304 ntBASIC1.98□□□□□ -2.09
SDC1P18827 AL136363.2-201ENST00000604173 851 ntBASIC1.98□□□□□ -2.09
SDC1P18827 APOOP1-201ENST00000604695 592 ntBASIC1.98□□□□□ -2.09
SDC1P18827 U2.17-201ENST00000611454 95 ntBASIC1.98□□□□□ -2.09
SDC1P18827 HULC.1-201ENST00000612720 240 ntBASIC1.98□□□□□ -2.09
SDC1P18827 uc_338.15-201ENST00000615470 191 ntBASIC1.98□□□□□ -2.09
SDC1P18827 MIR5739-201ENST00000619803 80 ntBASIC1.98□□□□□ -2.09
SDC1P18827 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC1.98□□□□□ -2.09
SDC1P18827 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.98□□□□□ -2.09
SDC1P18827 RNU6-1322P-201ENST00000364309 107 ntBASIC1.97□□□□□ -2.09
SDC1P18827 SNORA69-201ENST00000383895 132 ntBASIC1.97□□□□□ -2.09
SDC1P18827 Y_RNA.517-201ENST00000384551 106 ntBASIC1.97□□□□□ -2.09
SDC1P18827 RNU6-780P-201ENST00000391030 104 ntBASIC1.97□□□□□ -2.09
SDC1P18827 AL139156.1-201ENST00000412785 841 ntBASIC1.97□□□□□ -2.09
SDC1P18827 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.97□□□□□ -2.09
SDC1P18827 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC1P18827 AL589823.1-201ENST00000429577 183 ntBASIC1.97□□□□□ -2.09
SDC1P18827 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC1P18827 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC1P18827 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.97□□□□□ -2.09
SDC1P18827 IFNA11P-201ENST00000446352 526 ntBASIC1.97□□□□□ -2.09
SDC1P18827 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC1P18827 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.97□□□□□ -2.09
SDC1P18827 SRRM1P2-201ENST00000464531 1192 ntBASIC1.97□□□□□ -2.09
SDC1P18827 AL121594.1-201ENST00000475906 575 ntBASIC1.97□□□□□ -2.09
SDC1P18827 AC068781.1-201ENST00000488231 618 ntBASIC1.97□□□□□ -2.09
SDC1P18827 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.97□□□□□ -2.09
SDC1P18827 RNU1-40P-201ENST00000516816 164 ntBASIC1.97□□□□□ -2.09
SDC1P18827 RNU1-97P-201ENST00000516872 164 ntBASIC1.97□□□□□ -2.09
SDC1P18827 MTND4P7-201ENST00000523876 130 ntBASIC1.97□□□□□ -2.09
SDC1P18827 SNORD14A-201ENST00000606526 91 ntBASIC1.97□□□□□ -2.09
SDC1P18827 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SDC1P18827 AC073534.2-201ENST00000620377 381 ntBASIC1.97□□□□□ -2.09
SDC1P18827 MIR203B-201ENST00000636080 86 ntBASIC1.97□□□□□ -2.09
SDC1P18827 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC1.97□□□□□ -2.09
SDC1P18827 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SDC1P18827 AL596028.1-201ENST00000326971 197 ntBASIC1.96□□□□□ -2.1
SDC1P18827 RNU6-212P-201ENST00000362642 104 ntBASIC1.96□□□□□ -2.1
SDC1P18827 RNU6-428P-201ENST00000362942 107 ntBASIC1.96□□□□□ -2.1
SDC1P18827 RNU6-527P-201ENST00000363425 104 ntBASIC1.96□□□□□ -2.1
SDC1P18827 RNU6-1085P-201ENST00000363576 107 ntBASIC1.96□□□□□ -2.1
SDC1P18827 RNA5SP138-201ENST00000365098 114 ntBASIC1.96□□□□□ -2.1
SDC1P18827 RNU4-20P-201ENST00000365601 151 ntBASIC1.96□□□□□ -2.1
SDC1P18827 SNORA6-201ENST00000384033 151 ntBASIC1.96□□□□□ -2.1
SDC1P18827 MIR95-201ENST00000385072 81 ntBASIC1.96□□□□□ -2.1
SDC1P18827 RNU2-63P-201ENST00000410792 194 ntBASIC1.96□□□□□ -2.1
SDC1P18827 HMGB3P2-201ENST00000411913 584 ntBASIC1.96□□□□□ -2.1
SDC1P18827 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.96□□□□□ -2.1
SDC1P18827 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.96□□□□□ -2.1
SDC1P18827 AIMP1P2-201ENST00000425294 312 ntBASIC1.96□□□□□ -2.1
SDC1P18827 AL591043.1-201ENST00000432461 424 ntBASIC1.96□□□□□ -2.1
SDC1P18827 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.96□□□□□ -2.1
SDC1P18827 MTCO2P7-201ENST00000446518 666 ntBASIC1.96□□□□□ -2.1
SDC1P18827 snoU13.14-201ENST00000459372 104 ntBASIC1.96□□□□□ -2.1
SDC1P18827 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.96□□□□□ -2.1
SDC1P18827 RNU6-835P-201ENST00000516974 104 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms