Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MRPL42P2-201ENST00000403169 426 ntBASIC1.55□□□□□ -2.16
LSM1O15116 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.55□□□□□ -2.16
LSM1O15116 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.55□□□□□ -2.16
LSM1O15116 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.55□□□□□ -2.16
LSM1O15116 MTATP6P16-201ENST00000434543 526 ntBASIC1.55□□□□□ -2.16
LSM1O15116 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.55□□□□□ -2.16
LSM1O15116 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.55□□□□□ -2.16
LSM1O15116 AC104564.1-201ENST00000493028 407 ntBASIC1.55□□□□□ -2.16
LSM1O15116 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.55□□□□□ -2.16
LSM1O15116 FAM206BP-201ENST00000510179 541 ntBASIC1.55□□□□□ -2.16
LSM1O15116 RNU5F-2P-201ENST00000516066 82 ntBASIC1.55□□□□□ -2.16
LSM1O15116 Y_RNA.672-201ENST00000516289 104 ntBASIC1.55□□□□□ -2.16
LSM1O15116 SNORA44.1-201ENST00000517031 108 ntBASIC1.55□□□□□ -2.16
LSM1O15116 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.55□□□□□ -2.16
LSM1O15116 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC1.55□□□□□ -2.16
LSM1O15116 ELOCP32-201ENST00000548625 324 ntBASIC1.55□□□□□ -2.16
LSM1O15116 TMF1P1-201ENST00000576058 373 ntBASIC1.55□□□□□ -2.16
LSM1O15116 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.55□□□□□ -2.16
LSM1O15116 MIR8081-201ENST00000611533 95 ntBASIC1.55□□□□□ -2.16
LSM1O15116 MIR6845-201ENST00000613182 61 ntBASIC1.55□□□□□ -2.16
LSM1O15116 AC022513.1-201ENST00000624512 117 ntBASIC1.55□□□□□ -2.16
LSM1O15116 AC019226.2-201ENST00000625973 424 ntBASIC1.55□□□□□ -2.16
LSM1O15116 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
LSM1O15116 AL161722.3-201ENST00000605789 2983 ntBASIC1.54□□□□□ -2.16
LSM1O15116 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
LSM1O15116 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
LSM1O15116 RNA5SP493-201ENST00000364115 91 ntBASIC1.54□□□□□ -2.16
LSM1O15116 RNU6-169P-201ENST00000365336 107 ntBASIC1.54□□□□□ -2.16
LSM1O15116 RNU6-1222P-201ENST00000384615 107 ntBASIC1.54□□□□□ -2.16
LSM1O15116 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.54□□□□□ -2.16
LSM1O15116 AL356583.2-201ENST00000426536 280 ntBASIC1.54□□□□□ -2.16
LSM1O15116 AL669831.1-202ENST00000428504 417 ntBASIC1.54□□□□□ -2.16
LSM1O15116 KATNBL1P3-201ENST00000443475 909 ntBASIC1.54□□□□□ -2.16
LSM1O15116 AL513124.1-201ENST00000450410 614 ntBASIC1.54□□□□□ -2.16
LSM1O15116 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.54□□□□□ -2.16
LSM1O15116 MTND2P33-201ENST00000506452 1031 ntBASIC1.54□□□□□ -2.16
LSM1O15116 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.54□□□□□ -2.16
LSM1O15116 RNU6-991P-201ENST00000516168 107 ntBASIC1.54□□□□□ -2.16
LSM1O15116 SCARNA24.1-201ENST00000516465 137 ntBASIC1.54□□□□□ -2.16
LSM1O15116 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.54□□□□□ -2.16
LSM1O15116 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.54□□□□□ -2.16
LSM1O15116 RPL21P5-201ENST00000554662 472 ntBASIC1.54□□□□□ -2.16
LSM1O15116 MIR5692A1-201ENST00000580523 69 ntBASIC1.54□□□□□ -2.16
LSM1O15116 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
LSM1O15116 AC063943.3-201ENST00000615562 356 ntBASIC1.54□□□□□ -2.16
LSM1O15116 AC009159.2-201ENST00000617603 606 ntBASIC1.54□□□□□ -2.16
LSM1O15116 AC138649.3-201ENST00000622154 254 ntBASIC1.54□□□□□ -2.16
LSM1O15116 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.54□□□□□ -2.16
LSM1O15116 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
LSM1O15116 MTND5P10-201ENST00000603719 1809 ntBASIC1.54□□□□□ -2.16
LSM1O15116 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.54□□□□□ -2.16
LSM1O15116 RNU6-661P-201ENST00000362409 107 ntBASIC1.53□□□□□ -2.16
LSM1O15116 RNU6-743P-201ENST00000364151 106 ntBASIC1.53□□□□□ -2.16
LSM1O15116 SNORD114-6-201ENST00000364393 72 ntBASIC1.53□□□□□ -2.16
LSM1O15116 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.53□□□□□ -2.16
LSM1O15116 MIR30A-201ENST00000385092 71 ntBASIC1.53□□□□□ -2.16
LSM1O15116 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
LSM1O15116 MTCO3P46-201ENST00000425787 232 ntBASIC1.53□□□□□ -2.16
LSM1O15116 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.53□□□□□ -2.16
LSM1O15116 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.53□□□□□ -2.16
LSM1O15116 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.53□□□□□ -2.16
LSM1O15116 snoU13.15-201ENST00000459407 104 ntBASIC1.53□□□□□ -2.16
LSM1O15116 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC1.53□□□□□ -2.16
LSM1O15116 FO393415.2-201ENST00000480085 343 ntBASIC1.53□□□□□ -2.16
LSM1O15116 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.53□□□□□ -2.16
LSM1O15116 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.53□□□□□ -2.16
LSM1O15116 AP002453.2-201ENST00000533503 320 ntBASIC1.53□□□□□ -2.16
LSM1O15116 AP000873.5-201ENST00000533906 236 ntBASIC1.53□□□□□ -2.16
LSM1O15116 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.53□□□□□ -2.16
LSM1O15116 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC1.53□□□□□ -2.16
LSM1O15116 SUB1P4-201ENST00000566062 339 ntBASIC1.53□□□□□ -2.16
LSM1O15116 AC116312.1-201ENST00000606841 314 ntBASIC1.53□□□□□ -2.16
LSM1O15116 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
LSM1O15116 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.17
LSM1O15116 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
LSM1O15116 MIR424-201ENST00000362227 98 ntBASIC1.52□□□□□ -2.17
LSM1O15116 RNU4-15P-201ENST00000362613 141 ntBASIC1.52□□□□□ -2.17
LSM1O15116 Y_RNA.332-201ENST00000365271 113 ntBASIC1.52□□□□□ -2.17
LSM1O15116 RNU5E-7P-201ENST00000365290 117 ntBASIC1.52□□□□□ -2.17
LSM1O15116 SNORD115-7-201ENST00000365306 82 ntBASIC1.52□□□□□ -2.17
LSM1O15116 Y_RNA.576-201ENST00000384781 102 ntBASIC1.52□□□□□ -2.17
LSM1O15116 SNORA26.9-201ENST00000391322 122 ntBASIC1.52□□□□□ -2.17
LSM1O15116 SDAD1P3-201ENST00000427380 333 ntBASIC1.52□□□□□ -2.17
LSM1O15116 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC1.52□□□□□ -2.17
LSM1O15116 AL022238.1-201ENST00000442557 355 ntBASIC1.52□□□□□ -2.17
LSM1O15116 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.52□□□□□ -2.17
LSM1O15116 MTND2P4-201ENST00000445034 1004 ntBASIC1.52□□□□□ -2.17
LSM1O15116 USP9YP12-201ENST00000450481 570 ntBASIC1.52□□□□□ -2.17
LSM1O15116 AC010409.1-201ENST00000487382 476 ntBASIC1.52□□□□□ -2.17
LSM1O15116 AC098862.1-201ENST00000504991 413 ntBASIC1.52□□□□□ -2.17
LSM1O15116 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.52□□□□□ -2.17
LSM1O15116 AC116562.3-201ENST00000506136 177 ntBASIC1.52□□□□□ -2.17
LSM1O15116 AC090572.1-201ENST00000519251 160 ntBASIC1.52□□□□□ -2.17
LSM1O15116 AC068587.5-201ENST00000528506 175 ntBASIC1.52□□□□□ -2.17
LSM1O15116 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.52□□□□□ -2.17
LSM1O15116 TRAV32-201ENST00000553993 340 ntBASIC1.52□□□□□ -2.17
LSM1O15116 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
LSM1O15116 MIR502-201ENST00000606349 86 ntBASIC1.52□□□□□ -2.17
LSM1O15116 AC016597.2-201ENST00000613256 341 ntBASIC1.52□□□□□ -2.17
LSM1O15116 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms