Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.58□□□□□ -1.84
CBX4O00257 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.58□□□□□ -1.84
CBX4O00257 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CBX4O00257 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CBX4O00257 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CBX4O00257 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CBX4O00257 RNU4-35P-201ENST00000362588 141 ntBASIC3.57□□□□□ -1.84
CBX4O00257 RNU6-1286P-201ENST00000383871 107 ntBASIC3.57□□□□□ -1.84
CBX4O00257 MIR628-201ENST00000385229 95 ntBASIC3.57□□□□□ -1.84
CBX4O00257 SNORA69.1-201ENST00000390904 137 ntBASIC3.57□□□□□ -1.84
CBX4O00257 RNU6-750P-201ENST00000390946 107 ntBASIC3.57□□□□□ -1.84
CBX4O00257 SAR1AP2-201ENST00000392696 594 ntBASIC3.57□□□□□ -1.84
CBX4O00257 AL356057.3-201ENST00000402607 340 ntBASIC3.57□□□□□ -1.84
CBX4O00257 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CBX4O00257 MTND5P27-201ENST00000428871 1720 ntBASIC3.57□□□□□ -1.84
CBX4O00257 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CBX4O00257 AC112492.4-201ENST00000456549 352 ntBASIC3.57□□□□□ -1.84
CBX4O00257 RNU7-169P-201ENST00000459456 61 ntBASIC3.57□□□□□ -1.84
CBX4O00257 RN7SL594P-201ENST00000470590 287 ntBASIC3.57□□□□□ -1.84
CBX4O00257 RN7SL601P-201ENST00000471221 293 ntBASIC3.57□□□□□ -1.84
CBX4O00257 AP001025.1-201ENST00000486139 332 ntBASIC3.57□□□□□ -1.84
CBX4O00257 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
CBX4O00257 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.57□□□□□ -1.84
CBX4O00257 HSPE1P4-201ENST00000550617 308 ntBASIC3.57□□□□□ -1.84
CBX4O00257 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.57□□□□□ -1.84
CBX4O00257 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.57□□□□□ -1.84
CBX4O00257 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.57□□□□□ -1.84
CBX4O00257 AC090897.2-201ENST00000581715 130 ntBASIC3.57□□□□□ -1.84
CBX4O00257 VN1R91P-201ENST00000594377 169 ntBASIC3.57□□□□□ -1.84
CBX4O00257 AC016727.2-201ENST00000603988 621 ntBASIC3.57□□□□□ -1.84
CBX4O00257 SNORD58B-201ENST00000607313 66 ntBASIC3.57□□□□□ -1.84
CBX4O00257 AL132822.1-201ENST00000617063 513 ntBASIC3.57□□□□□ -1.84
CBX4O00257 AC244205.2-202ENST00000635781 342 ntBASIC3.57□□□□□ -1.84
CBX4O00257 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
CBX4O00257 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CBX4O00257 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.56□□□□□ -1.84
CBX4O00257 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.56□□□□□ -1.84
CBX4O00257 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
CBX4O00257 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.56□□□□□ -1.84
CBX4O00257 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.56□□□□□ -1.84
CBX4O00257 Y_RNA.111-201ENST00000363248 100 ntBASIC3.56□□□□□ -1.84
CBX4O00257 Y_RNA.405-201ENST00000383979 100 ntBASIC3.56□□□□□ -1.84
CBX4O00257 Y_RNA.451-201ENST00000384200 100 ntBASIC3.56□□□□□ -1.84
CBX4O00257 Y_RNA.485-201ENST00000384395 102 ntBASIC3.56□□□□□ -1.84
CBX4O00257 Y_RNA.504-201ENST00000384481 104 ntBASIC3.56□□□□□ -1.84
CBX4O00257 Y_RNA.524-201ENST00000384564 100 ntBASIC3.56□□□□□ -1.84
CBX4O00257 Y_RNA.561-201ENST00000384694 100 ntBASIC3.56□□□□□ -1.84
CBX4O00257 MIR634-201ENST00000385208 97 ntBASIC3.56□□□□□ -1.84
CBX4O00257 MIR767-201ENST00000390228 109 ntBASIC3.56□□□□□ -1.84
CBX4O00257 SNORA12.2-201ENST00000391040 156 ntBASIC3.56□□□□□ -1.84
CBX4O00257 AC017083.1-201ENST00000428093 483 ntBASIC3.56□□□□□ -1.84
CBX4O00257 AC096644.2-201ENST00000429278 159 ntBASIC3.56□□□□□ -1.84
CBX4O00257 MTCO3P29-201ENST00000432119 779 ntBASIC3.56□□□□□ -1.84
CBX4O00257 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.56□□□□□ -1.84
CBX4O00257 RBMY2UP-201ENST00000453474 324 ntBASIC3.56□□□□□ -1.84
CBX4O00257 RPS29P2-201ENST00000479278 136 ntBASIC3.56□□□□□ -1.84
CBX4O00257 AC016632.1-201ENST00000503994 196 ntBASIC3.56□□□□□ -1.84
CBX4O00257 AC021146.2-201ENST00000504736 556 ntBASIC3.56□□□□□ -1.84
CBX4O00257 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.56□□□□□ -1.84
CBX4O00257 SNORA40.14-201ENST00000516543 86 ntBASIC3.56□□□□□ -1.84
CBX4O00257 RNU5B-3P-201ENST00000516601 115 ntBASIC3.56□□□□□ -1.84
CBX4O00257 AC016256.1-201ENST00000547971 354 ntBASIC3.56□□□□□ -1.84
CBX4O00257 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.56□□□□□ -1.84
CBX4O00257 AC105137.2-201ENST00000569073 466 ntBASIC3.56□□□□□ -1.84
CBX4O00257 AC006600.1-201ENST00000572529 153 ntBASIC3.56□□□□□ -1.84
CBX4O00257 RPL23AP78-201ENST00000599928 470 ntBASIC3.56□□□□□ -1.84
CBX4O00257 AC104695.3-201ENST00000604052 296 ntBASIC3.56□□□□□ -1.84
CBX4O00257 SCARNA4-201ENST00000629045 128 ntBASIC3.56□□□□□ -1.84
CBX4O00257 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CBX4O00257 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.56□□□□□ -1.84
CBX4O00257 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
CBX4O00257 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.55□□□□□ -1.84
CBX4O00257 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CBX4O00257 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.55□□□□□ -1.84
CBX4O00257 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
CBX4O00257 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.55□□□□□ -1.84
CBX4O00257 RNY3P11-201ENST00000364153 102 ntBASIC3.55□□□□□ -1.84
CBX4O00257 SNORA14A-201ENST00000364773 135 ntBASIC3.55□□□□□ -1.84
CBX4O00257 SNORD14.1-201ENST00000365609 90 ntBASIC3.55□□□□□ -1.84
CBX4O00257 RNU6-622P-201ENST00000384272 103 ntBASIC3.55□□□□□ -1.84
CBX4O00257 Y_RNA.526-201ENST00000384572 110 ntBASIC3.55□□□□□ -1.84
CBX4O00257 RNA5SP120-201ENST00000410900 112 ntBASIC3.55□□□□□ -1.84
CBX4O00257 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.55□□□□□ -1.84
CBX4O00257 AL358453.1-201ENST00000422522 250 ntBASIC3.55□□□□□ -1.84
CBX4O00257 GPM6BP3-201ENST00000442797 145 ntBASIC3.55□□□□□ -1.84
CBX4O00257 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.55□□□□□ -1.84
CBX4O00257 RPL39P29-201ENST00000447779 157 ntBASIC3.55□□□□□ -1.84
CBX4O00257 snoU13.30-201ENST00000458951 104 ntBASIC3.55□□□□□ -1.84
CBX4O00257 AC091874.1-201ENST00000511402 339 ntBASIC3.55□□□□□ -1.84
CBX4O00257 SNORD59.2-201ENST00000516873 68 ntBASIC3.55□□□□□ -1.84
CBX4O00257 MRPS36P4-201ENST00000534436 298 ntBASIC3.55□□□□□ -1.84
CBX4O00257 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.55□□□□□ -1.84
CBX4O00257 RNU6-91P-201ENST00000607774 107 ntBASIC3.55□□□□□ -1.84
CBX4O00257 U2.1-201ENST00000618978 145 ntBASIC3.55□□□□□ -1.84
CBX4O00257 AC007792.1-201ENST00000623023 402 ntBASIC3.55□□□□□ -1.84
CBX4O00257 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CBX4O00257 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CBX4O00257 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.54□□□□□ -1.84
CBX4O00257 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CBX4O00257 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms