Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 5S_rRNA.11-201ENST00000618635 84 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 NOL8P1-201ENST00000508336 3529 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 AC002543.1-201ENST00000299783 1954 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 AC139713.2-214ENST00000642059 1811 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 AC080128.1-201ENST00000474389 1917 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 RNU6-1276P-201ENST00000365372 104 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 SNORA77-201ENST00000408716 125 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 EIF4HP2-201ENST00000424380 563 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 RPL23AP82-202ENST00000427528 469 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 RPL23AP7-203ENST00000449021 469 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 CENPBD1P1-201ENST00000464061 469 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 RN7SL244P-201ENST00000493405 297 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 SNORD77.4-201ENST00000516158 81 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 SNORA70.16-201ENST00000516390 95 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 RNA5SP367-201ENST00000516557 118 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 BNIP3P1-201ENST00000547295 580 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 AL161713.1-201ENST00000555538 145 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 IGLL4P-201ENST00000614590 133 ntBASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS9D1Q9Y2B5 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 AC107068.1-201ENST00000563286 4218 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 ASNSP1-201ENST00000518311 1939 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 Y_RNA.107-201ENST00000363190 121 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 RNA5SP515-201ENST00000364570 118 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 RNU6-487P-201ENST00000365430 104 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 MIR873-201ENST00000401120 77 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 AL133270.1-201ENST00000402635 279 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 U3.36-201ENST00000408418 213 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 RN7SL517P-201ENST00000462240 305 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 COX6B1P5-201ENST00000509843 249 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 RNA5SP236-201ENST00000516169 116 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 RNU4-60P-201ENST00000517239 135 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 IGLV2-28-201ENST00000520681 304 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 AP006245.2-201ENST00000522004 300 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 MIR4472-2-201ENST00000582069 67 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 AL365205.2-201ENST00000594586 68 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 AC211433.2-201ENST00000608433 387 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 PCGEM1.1-201ENST00000613431 131 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 AC126323.6-202ENST00000568092 3511 ntBASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS9D1Q9Y2B5 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 AL159152.1-201ENST00000635019 2587 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 U8.12-201ENST00000384701 133 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 MIR325-201ENST00000385260 98 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 SPTLC1P2-201ENST00000407089 121 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 AL450023.3-201ENST00000440592 271 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 AC023449.1-201ENST00000454464 154 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 AC072052.1-201ENST00000496556 306 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 SNORD116-26-201ENST00000516006 96 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 AP004371.1-201ENST00000525240 214 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 AL020997.2-201ENST00000602607 184 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 AC012468.1-201ENST00000604888 430 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 uc_338.4-201ENST00000616635 176 ntBASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS9D1Q9Y2B5 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms