Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 PCNPP5-201ENST00000452246 481 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 HMGN2P16-201ENST00000456802 261 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 MRPS35P2-201ENST00000508242 191 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 AC092436.3-201ENST00000511788 257 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 RNU1-54P-201ENST00000517181 120 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 AC025423.5-201ENST00000550230 219 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 SYF2P1-201ENST00000550658 413 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.13□□□□□ -1.91
EBF3Q9H4W6 MED28P6-201ENST00000558776 231 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.13□□□□□ -1.91
EBF3Q9H4W6 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.13□□□□□ -1.91
EBF3Q9H4W6 MIR3921-201ENST00000577308 85 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 MIR4474-201ENST00000579189 78 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
EBF3Q9H4W6 AL161423.1-201ENST00000613700 262 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 AC034102.8-201ENST00000615146 484 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.13□□□□□ -1.91
EBF3Q9H4W6 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.13□□□□□ -1.91
EBF3Q9H4W6 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AC002546.1-201ENST00000588041 2504 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 SNORD62.1-201ENST00000362541 86 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.106-201ENST00000363189 100 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.389-201ENST00000383924 113 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.396-201ENST00000383949 103 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 MIR514A1-201ENST00000385133 98 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 SNORA48.8-201ENST00000391324 134 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 BMS1P22-201ENST00000414726 313 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 USMG5P1-201ENST00000425964 177 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 HMGB1P27-201ENST00000431429 603 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AL591212.2-201ENST00000433923 257 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 FTH1P25-201ENST00000447665 469 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 CHEK2P4-201ENST00000450340 246 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AL353752.1-201ENST00000454946 260 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 RPL23AP31-201ENST00000456160 467 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 snoU13.4-201ENST00000458916 104 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 RNU7-187P-201ENST00000458985 68 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AC104564.1-201ENST00000493028 407 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AC091826.1-201ENST00000514065 313 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.680-201ENST00000516441 93 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 SNORD116.3-201ENST00000517176 78 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 GTF3AP2-201ENST00000557014 266 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 MIR4672-201ENST00000583126 81 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AC005357.1-201ENST00000588399 301 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AC012119.1-201ENST00000603184 222 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AC002044.1-201ENST00000606707 158 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 U2.1-201ENST00000618978 145 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AC009487.2-201ENST00000420969 6821 ntBASIC3.12□□□□□ -1.91
EBF3Q9H4W6 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
EBF3Q9H4W6 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.11□□□□□ -1.91
EBF3Q9H4W6 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
EBF3Q9H4W6 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
EBF3Q9H4W6 RNU6-266P-201ENST00000364225 107 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.428-201ENST00000384078 102 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 AL031121.1-201ENST00000406553 254 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.11□□□□□ -1.91
EBF3Q9H4W6 AL359672.1-201ENST00000442302 409 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.11□□□□□ -1.91
EBF3Q9H4W6 AC117440.1-201ENST00000474107 571 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.11□□□□□ -1.91
EBF3Q9H4W6 RPL22P13-201ENST00000493291 347 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 AC104136.1-201ENST00000512969 394 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 SCARNA15.2-201ENST00000516409 127 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 AP005902.1-201ENST00000521358 186 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 AC026371.1-201ENST00000551867 419 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 RPL12P50-201ENST00000603116 116 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 HMGB1P24-202ENST00000615653 685 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
EBF3Q9H4W6 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
EBF3Q9H4W6 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.11□□□□□ -1.91
EBF3Q9H4W6 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
EBF3Q9H4W6 AC007256.1-201ENST00000392253 2765 ntBASIC3.11□□□□□ -1.91
EBF3Q9H4W6 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.2-201ENST00000362330 96 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 RNU6-288P-201ENST00000363690 104 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 RNU6-99P-201ENST00000364721 107 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 DEFB109C-201ENST00000382575 264 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 DEFB109B-201ENST00000382656 264 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 RNU6-472P-201ENST00000384299 107 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.534-201ENST00000384599 112 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 MIR1290-201ENST00000408735 78 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 RNU6-847P-201ENST00000411115 108 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 NDUFB4P7-201ENST00000423198 363 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AL160275.3-201ENST00000423876 471 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms