Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.59□□□□□ -1.67
USB1Q9BQ65 AL645733.1-201ENST00000402250 217 ntBASIC4.59□□□□□ -1.67
USB1Q9BQ65 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
USB1Q9BQ65 RPL23AP1-201ENST00000428990 471 ntBASIC4.59□□□□□ -1.67
USB1Q9BQ65 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.59□□□□□ -1.67
USB1Q9BQ65 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.59□□□□□ -1.67
USB1Q9BQ65 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.59□□□□□ -1.67
USB1Q9BQ65 snoU13.14-201ENST00000459372 104 ntBASIC4.59□□□□□ -1.67
USB1Q9BQ65 RPL7AP28-201ENST00000464513 571 ntBASIC4.59□□□□□ -1.67
USB1Q9BQ65 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
USB1Q9BQ65 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.67
USB1Q9BQ65 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
USB1Q9BQ65 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.68
USB1Q9BQ65 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.59□□□□□ -1.68
USB1Q9BQ65 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.68
USB1Q9BQ65 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.68
USB1Q9BQ65 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
USB1Q9BQ65 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.58□□□□□ -1.68
USB1Q9BQ65 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.58□□□□□ -1.68
USB1Q9BQ65 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USB1Q9BQ65 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USB1Q9BQ65 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USB1Q9BQ65 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USB1Q9BQ65 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USB1Q9BQ65 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USB1Q9BQ65 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USB1Q9BQ65 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.58□□□□□ -1.68
USB1Q9BQ65 RNU6-1010P-201ENST00000362757 107 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 RN7SKP113-201ENST00000363891 295 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 RNU6-647P-201ENST00000364243 107 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 RNU6-19P-201ENST00000384718 107 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
USB1Q9BQ65 MIR708-201ENST00000390708 88 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 RNA5SP496-201ENST00000391240 109 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 RNA5SP129-201ENST00000410276 118 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 Y_RNA.617-201ENST00000410920 90 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 AC006028.1-201ENST00000438379 402 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 AL358232.1-201ENST00000448030 501 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
USB1Q9BQ65 AC009127.1-201ENST00000467090 155 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 AC105137.1-201ENST00000484355 562 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 RNU6-1337P-201ENST00000516525 95 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 RNU2-60P-201ENST00000517290 128 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.58□□□□□ -1.68
USB1Q9BQ65 RN7SL290P-201ENST00000578661 300 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 AC131055.1-201ENST00000584626 316 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 HMGN2P15-201ENST00000585707 270 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 POLR3GP1-201ENST00000594073 261 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 RNU6-91P-201ENST00000607774 107 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 BMS1P21-201ENST00000634565 365 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
USB1Q9BQ65 AC010733.2-201ENST00000589496 5702 ntBASIC4.58□□□□□ -1.68
USB1Q9BQ65 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
USB1Q9BQ65 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
USB1Q9BQ65 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USB1Q9BQ65 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
USB1Q9BQ65 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USB1Q9BQ65 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 RNU6-1305P-201ENST00000364353 104 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 RNA5SP90-201ENST00000364801 99 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 RNU6-1323P-201ENST00000384025 107 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 Y_RNA.432-201ENST00000384087 111 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 RNU6-748P-201ENST00000384648 107 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 RNU6-136P-201ENST00000384663 107 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 MIR548A1-201ENST00000385041 97 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 RNA5SP241-201ENST00000391326 114 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 RNU2-55P-201ENST00000411146 174 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 RN7SKP101-201ENST00000411376 320 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 AC093162.1-201ENST00000419682 124 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 RPL23AP82-202ENST00000427528 469 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 RPL23AP7-203ENST00000449021 469 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 CENPBD1P1-201ENST00000464061 469 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 RPS26P45-201ENST00000471748 340 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 AC078817.1-201ENST00000492623 435 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 RN7SL244P-201ENST00000493405 297 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 Vault.1-201ENST00000516474 102 ntBASIC4.57□□□□□ -1.68
USB1Q9BQ65 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USB1Q9BQ65 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
USB1Q9BQ65 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
USB1Q9BQ65 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
USB1Q9BQ65 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USB1Q9BQ65 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USB1Q9BQ65 AL590240.1-201ENST00000334118 313 ntBASIC4.56□□□□□ -1.68
USB1Q9BQ65 SNORD114-19-201ENST00000363072 75 ntBASIC4.56□□□□□ -1.68
USB1Q9BQ65 Y_RNA.116-201ENST00000363292 103 ntBASIC4.56□□□□□ -1.68
USB1Q9BQ65 SNORD116-13-201ENST00000384408 92 ntBASIC4.56□□□□□ -1.68
USB1Q9BQ65 MIR873-201ENST00000401120 77 ntBASIC4.56□□□□□ -1.68
USB1Q9BQ65 AL603914.1-201ENST00000401964 204 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms