Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 AL133162.1-201ENST00000463228 453 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 AC018437.1-201ENST00000492214 406 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 RNU1-95P-201ENST00000516357 160 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 RNU1-128P-201ENST00000516704 160 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 SCARNA14-201ENST00000516903 136 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 RNU6-897P-201ENST00000517135 105 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 AC109329.1-201ENST00000518744 317 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 AC012433.1-201ENST00000588916 398 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 RMST_8.1-201ENST00000610287 165 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 AC099778.2-201ENST00000610904 211 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 AL591516.1-201ENST00000611326 274 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 AL161912.2-201ENST00000565707 3007 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 MTND5P6-201ENST00000422338 1798 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 SNORA5A-201ENST00000384111 134 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.785-201ENST00000384290 109 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.555-201ENST00000384673 110 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 MIR199A2-201ENST00000385289 110 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 AL035423.1-201ENST00000420331 213 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 snoU109.2-201ENST00000459316 135 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 RNU6-397P-201ENST00000516226 104 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.687-201ENST00000516558 91 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 AC006199.1-201ENST00000548728 219 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 RRN3P3-201ENST00000549207 578 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 VN1R91P-201ENST00000594377 169 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 AL159153.1-201ENST00000619688 317 ntBASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.61□□□□□ -1.83
CLIP3Q96DZ5 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.20-201ENST00000362479 113 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 SNORA73.2-201ENST00000364946 201 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.478-201ENST00000384358 107 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.539-201ENST00000384635 107 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 MIR7-3-201ENST00000384898 110 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 AL445529.1-201ENST00000398713 389 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 RNU6-121P-201ENST00000410525 99 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 RNU2-14P-201ENST00000411053 191 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 AL096701.2-201ENST00000416920 238 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 YME1L1P1-201ENST00000429435 297 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 AL159987.2-201ENST00000432754 307 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 MTND5P15-201ENST00000434246 349 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 HIGD1AP2-201ENST00000446367 280 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 AC125238.1-201ENST00000448842 249 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 OR2AQ1P-201ENST00000451972 200 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 LINC01399-202ENST00000458450 244 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 AP004607.1-201ENST00000524456 203 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 AC025281.1-201ENST00000567026 265 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 MIR5187-201ENST00000583479 76 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 AC091564.4-201ENST00000533934 2194 ntBASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP3Q96DZ5 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 RNA5SP139-201ENST00000364340 117 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 RNU6-1280P-201ENST00000365211 107 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 CD24P4-201ENST00000382840 243 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 MIR767-201ENST00000390228 109 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 RNU2-49P-201ENST00000410666 184 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 RNU6-130P-201ENST00000411112 103 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 RNU6-325P-201ENST00000411132 105 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AC006946.1-201ENST00000429106 328 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 RPS3AP46-201ENST00000448352 682 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms