Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MIR1265-201ENST00000408444 86 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 AL022718.1-201ENST00000412004 84 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC0.16□□□□□ -2.38
USF3Q68DE3 GPM6BP2-201ENST00000432046 144 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 RPEP5-201ENST00000441137 268 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 GPM6BP1-201ENST00000446387 144 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.16□□□□□ -2.38
USF3Q68DE3 RNU6-528P-201ENST00000516926 100 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 RNA5SP135-201ENST00000517019 125 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 RN7SKP258-201ENST00000517151 304 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC0.16□□□□□ -2.38
USF3Q68DE3 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC0.16□□□□□ -2.38
USF3Q68DE3 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.16□□□□□ -2.38
USF3Q68DE3 AC068790.6-201ENST00000602558 258 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 AC004908.3-201ENST00000610248 625 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 AL138726.1-201ENST00000614873 333 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 uc_338.22-201ENST00000622722 187 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
USF3Q68DE3 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.16□□□□□ -2.38
USF3Q68DE3 RNU6-112P-201ENST00000363599 104 ntBASIC0.15□□□□□ -2.38
USF3Q68DE3 AL356776.1-201ENST00000406574 447 ntBASIC0.15□□□□□ -2.38
USF3Q68DE3 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.15□□□□□ -2.38
USF3Q68DE3 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.15□□□□□ -2.38
USF3Q68DE3 AC008267.5-201ENST00000424928 265 ntBASIC0.15□□□□□ -2.38
USF3Q68DE3 PTGES3P1-201ENST00000439531 483 ntBASIC0.15□□□□□ -2.38
USF3Q68DE3 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.15□□□□□ -2.38
USF3Q68DE3 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC0.15□□□□□ -2.38
USF3Q68DE3 AC084024.2-201ENST00000503480 791 ntBASIC0.15□□□□□ -2.38
USF3Q68DE3 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.15□□□□□ -2.38
USF3Q68DE3 AC011406.1-201ENST00000512440 370 ntBASIC0.15□□□□□ -2.38
USF3Q68DE3 RNU6-840P-201ENST00000517275 65 ntBASIC0.15□□□□□ -2.38
USF3Q68DE3 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC0.15□□□□□ -2.38
USF3Q68DE3 AC091489.2-201ENST00000566263 604 ntBASIC0.15□□□□□ -2.38
USF3Q68DE3 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC0.15□□□□□ -2.38
USF3Q68DE3 AL118556.2-201ENST00000614375 824 ntBASIC0.15□□□□□ -2.38
USF3Q68DE3 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.15□□□□□ -2.38
USF3Q68DE3 AL590396.4-201ENST00000636779 956 ntBASIC0.15□□□□□ -2.38
USF3Q68DE3 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
USF3Q68DE3 MTCO2P31-201ENST00000402702 684 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 UBE2V1P11-201ENST00000411559 285 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 RAB28P5-201ENST00000427490 651 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 RPL36AP53-201ENST00000432891 316 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC0.15□□□□□ -2.39
USF3Q68DE3 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.15□□□□□ -2.39
USF3Q68DE3 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.15□□□□□ -2.39
USF3Q68DE3 NDUFA5P7-201ENST00000452914 242 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 ACA64.5-201ENST00000516207 127 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 RNVU1-2-201ENST00000516326 135 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 RNA5SP503-201ENST00000517047 117 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 RNA5SP437-201ENST00000517249 129 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 AL442163.3-201ENST00000554110 156 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 AC002400.1-201ENST00000569310 726 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 EIF1P4-201ENST00000572664 335 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 MIR4802-201ENST00000581881 80 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 AC107952.2-201ENST00000606048 486 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 MIR6134-201ENST00000617606 109 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 AC130454.1-201ENST00000622948 401 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 MTND4P16-201ENST00000466108 1367 ntBASIC0.15□□□□□ -2.39
USF3Q68DE3 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.15□□□□□ -2.39
USF3Q68DE3 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
USF3Q68DE3 SNORD114-6-201ENST00000364393 72 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.14□□□□□ -2.39
USF3Q68DE3 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
USF3Q68DE3 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
USF3Q68DE3 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
USF3Q68DE3 RPL21P111-201ENST00000418453 477 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 RPS15AP9-201ENST00000439856 381 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AC004854.1-201ENST00000440356 349 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.14□□□□□ -2.39
USF3Q68DE3 RNU6-416P-201ENST00000516265 103 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 RNU6-885P-201ENST00000516607 104 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC0.14□□□□□ -2.39
USF3Q68DE3 MIR5190-201ENST00000581537 80 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AL162730.1-201ENST00000605734 292 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AL603758.1-201ENST00000618654 241 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AC104820.1-201ENST00000624183 307 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
USF3Q68DE3 AC008993.2-201ENST00000631744 806 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 RNU5E-8P-201ENST00000363502 116 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 Y_RNA.549-201ENST00000384657 102 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AC010099.3-201ENST00000423896 409 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 MTND2P21-201ENST00000436242 1042 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC0.14□□□□□ -2.39
USF3Q68DE3 OR6C5P-201ENST00000452388 923 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 RNU6-703P-201ENST00000516946 107 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AC018630.3-201ENST00000542637 96 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC0.14□□□□□ -2.39
USF3Q68DE3 AC095057.3-201ENST00000567102 1157 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 MIR3169-201ENST00000578032 83 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC0.14□□□□□ -2.39
USF3Q68DE3 AL355598.1-201ENST00000604169 202 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AC087588.2-201ENST00000617667 426 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 AC013470.4-201ENST00000619978 986 ntBASIC0.14□□□□□ -2.39
USF3Q68DE3 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.14□□□□□ -2.39
USF3Q68DE3 Y_RNA.548-201ENST00000384656 105 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 SNORD99-201ENST00000408612 74 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 MTCYBP38-201ENST00000417160 1123 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 Z95118.1-201ENST00000421372 247 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 MTND2P4-201ENST00000445034 1004 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms