Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 U4.1-201ENST00000620349 87 ntBASIC3.35□□□□□ -1.87
CD40P25942 CR392039.5-201ENST00000623201 510 ntBASIC3.35□□□□□ -1.87
CD40P25942 SNORD98-201ENST00000636377 67 ntBASIC3.35□□□□□ -1.87
CD40P25942 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.35□□□□□ -1.87
CD40P25942 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CD40P25942 MAPK10-372ENST00000641954 3413 ntBASIC3.35□□□□□ -1.87
CD40P25942 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.35□□□□□ -1.87
CD40P25942 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CD40P25942 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CD40P25942 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CD40P25942 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CD40P25942 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CD40P25942 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
CD40P25942 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.34□□□□□ -1.87
CD40P25942 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
CD40P25942 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.34□□□□□ -1.87
CD40P25942 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CD40P25942 RNU6-529P-201ENST00000363383 104 ntBASIC3.34□□□□□ -1.87
CD40P25942 Y_RNA.193-201ENST00000363979 102 ntBASIC3.34□□□□□ -1.87
CD40P25942 Y_RNA.319-201ENST00000365138 92 ntBASIC3.34□□□□□ -1.87
CD40P25942 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.34□□□□□ -1.87
CD40P25942 MIR23B-201ENST00000384832 97 ntBASIC3.34□□□□□ -1.87
CD40P25942 MIR199A2-201ENST00000385289 110 ntBASIC3.34□□□□□ -1.87
CD40P25942 SNORA26.3-201ENST00000391119 136 ntBASIC3.34□□□□□ -1.87
CD40P25942 RNU1-101P-201ENST00000391171 127 ntBASIC3.34□□□□□ -1.87
CD40P25942 RPL21P1-201ENST00000399532 476 ntBASIC3.34□□□□□ -1.87
CD40P25942 AL356968.1-201ENST00000416622 474 ntBASIC3.34□□□□□ -1.87
CD40P25942 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.34□□□□□ -1.87
CD40P25942 AL358232.1-201ENST00000448030 501 ntBASIC3.34□□□□□ -1.87
CD40P25942 AL133547.1-201ENST00000448546 220 ntBASIC3.34□□□□□ -1.87
CD40P25942 AP000705.1-201ENST00000454567 350 ntBASIC3.34□□□□□ -1.87
CD40P25942 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.34□□□□□ -1.87
CD40P25942 AC112771.1-201ENST00000463581 102 ntBASIC3.34□□□□□ -1.87
CD40P25942 AC010469.2-201ENST00000496412 480 ntBASIC3.34□□□□□ -1.87
CD40P25942 SNORA25.11-201ENST00000515935 105 ntBASIC3.34□□□□□ -1.87
CD40P25942 RNA5SP164-201ENST00000516533 110 ntBASIC3.34□□□□□ -1.87
CD40P25942 MIR2355-201ENST00000517199 87 ntBASIC3.34□□□□□ -1.87
CD40P25942 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CD40P25942 AP002770.2-201ENST00000543613 532 ntBASIC3.34□□□□□ -1.87
CD40P25942 AC027288.2-201ENST00000553028 243 ntBASIC3.34□□□□□ -1.87
CD40P25942 AC004817.2-201ENST00000561794 651 ntBASIC3.34□□□□□ -1.87
CD40P25942 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.34□□□□□ -1.87
CD40P25942 AC012493.2-201ENST00000595083 291 ntBASIC3.34□□□□□ -1.87
CD40P25942 XIST_intron.1-201ENST00000619444 68 ntBASIC3.34□□□□□ -1.87
CD40P25942 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.34□□□□□ -1.87
CD40P25942 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CD40P25942 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.34□□□□□ -1.87
CD40P25942 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CD40P25942 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.34□□□□□ -1.88
CD40P25942 LINC02471-203ENST00000641941 4752 ntBASIC3.34□□□□□ -1.88
CD40P25942 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
CD40P25942 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
CD40P25942 GABRG2-229ENST00000641017 3628 ntBASIC3.33□□□□□ -1.88
CD40P25942 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CD40P25942 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.33□□□□□ -1.88
CD40P25942 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CD40P25942 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CD40P25942 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.33□□□□□ -1.88
CD40P25942 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.33□□□□□ -1.88
CD40P25942 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.33□□□□□ -1.88
CD40P25942 Y_RNA.40-201ENST00000362645 93 ntBASIC3.33□□□□□ -1.88
CD40P25942 RNU6-1010P-201ENST00000362757 107 ntBASIC3.33□□□□□ -1.88
CD40P25942 RNU6-1159P-201ENST00000362933 107 ntBASIC3.33□□□□□ -1.88
CD40P25942 SNORD74.4-201ENST00000364129 80 ntBASIC3.33□□□□□ -1.88
CD40P25942 Y_RNA.214-201ENST00000364201 112 ntBASIC3.33□□□□□ -1.88
CD40P25942 RNY3P4-201ENST00000384428 101 ntBASIC3.33□□□□□ -1.88
CD40P25942 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.33□□□□□ -1.88
CD40P25942 RAC1P3-201ENST00000416129 580 ntBASIC3.33□□□□□ -1.88
CD40P25942 ELOCP20-201ENST00000422460 345 ntBASIC3.33□□□□□ -1.88
CD40P25942 AC012306.1-201ENST00000423267 114 ntBASIC3.33□□□□□ -1.88
CD40P25942 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.33□□□□□ -1.88
CD40P25942 AL445305.1-201ENST00000432577 575 ntBASIC3.33□□□□□ -1.88
CD40P25942 RPEP5-201ENST00000441137 268 ntBASIC3.33□□□□□ -1.88
CD40P25942 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.33□□□□□ -1.88
CD40P25942 AIG1P1-201ENST00000503376 148 ntBASIC3.33□□□□□ -1.88
CD40P25942 RNY3P15-201ENST00000516297 97 ntBASIC3.33□□□□□ -1.88
CD40P25942 SNORA40.15-201ENST00000516884 107 ntBASIC3.33□□□□□ -1.88
CD40P25942 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.33□□□□□ -1.88
CD40P25942 MIR4429-201ENST00000580105 73 ntBASIC3.33□□□□□ -1.88
CD40P25942 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.33□□□□□ -1.88
CD40P25942 AL121772.2-201ENST00000614331 297 ntBASIC3.33□□□□□ -1.88
CD40P25942 AC039056.2-201ENST00000622261 511 ntBASIC3.33□□□□□ -1.88
CD40P25942 AC110079.1-202ENST00000635213 138 ntBASIC3.33□□□□□ -1.88
CD40P25942 U6.92-201ENST00000636464 89 ntBASIC3.33□□□□□ -1.88
CD40P25942 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CD40P25942 AL161912.2-201ENST00000565707 3007 ntBASIC3.33□□□□□ -1.88
CD40P25942 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.33□□□□□ -1.88
CD40P25942 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
CD40P25942 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CD40P25942 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
CD40P25942 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
CD40P25942 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CD40P25942 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.32□□□□□ -1.88
CD40P25942 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CD40P25942 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.32□□□□□ -1.88
CD40P25942 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CD40P25942 RNU6-1301P-201ENST00000362724 104 ntBASIC3.32□□□□□ -1.88
CD40P25942 RNU6-879P-201ENST00000364328 108 ntBASIC3.32□□□□□ -1.88
CD40P25942 Y_RNA.276-201ENST00000364732 109 ntBASIC3.32□□□□□ -1.88
CD40P25942 RNU6-702P-201ENST00000364982 107 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms