Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 OR11H5P-201ENST00000554039 926 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 MIR3200-201ENST00000580767 85 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 AC093732.2-201ENST00000607950 274 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.34□□□□□ -1.87
HMGB1P09429 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.34□□□□□ -1.87
HMGB1P09429 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
HMGB1P09429 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.34□□□□□ -1.88
HMGB1P09429 RNU6-611P-201ENST00000384276 104 ntBASIC3.33□□□□□ -1.88
HMGB1P09429 RNU2-48P-201ENST00000410694 191 ntBASIC3.33□□□□□ -1.88
HMGB1P09429 EEF1A1P41-201ENST00000414667 207 ntBASIC3.33□□□□□ -1.88
HMGB1P09429 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.33□□□□□ -1.88
HMGB1P09429 AL139132.1-201ENST00000431587 344 ntBASIC3.33□□□□□ -1.88
HMGB1P09429 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.33□□□□□ -1.88
HMGB1P09429 PRELID3BP1-201ENST00000457142 540 ntBASIC3.33□□□□□ -1.88
HMGB1P09429 RNU7-138P-201ENST00000459479 64 ntBASIC3.33□□□□□ -1.88
HMGB1P09429 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.33□□□□□ -1.88
HMGB1P09429 RPL23AP11-201ENST00000475260 469 ntBASIC3.33□□□□□ -1.88
HMGB1P09429 AC090525.1-201ENST00000479116 478 ntBASIC3.33□□□□□ -1.88
HMGB1P09429 SNORA14.1-201ENST00000516113 141 ntBASIC3.33□□□□□ -1.88
HMGB1P09429 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.33□□□□□ -1.88
HMGB1P09429 AC007375.1-201ENST00000554513 578 ntBASIC3.33□□□□□ -1.88
HMGB1P09429 AC078899.2-201ENST00000595282 212 ntBASIC3.33□□□□□ -1.88
HMGB1P09429 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HMGB1P09429 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.33□□□□□ -1.88
HMGB1P09429 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.33□□□□□ -1.88
HMGB1P09429 RPL17P50-201ENST00000396131 546 ntBASIC3.32□□□□□ -1.88
HMGB1P09429 POLHP1-201ENST00000411806 470 ntBASIC3.32□□□□□ -1.88
HMGB1P09429 IFNA20P-201ENST00000436840 528 ntBASIC3.32□□□□□ -1.88
HMGB1P09429 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.32□□□□□ -1.88
HMGB1P09429 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.32□□□□□ -1.88
HMGB1P09429 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.32□□□□□ -1.88
HMGB1P09429 AC145146.1-201ENST00000496370 254 ntBASIC3.32□□□□□ -1.88
HMGB1P09429 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.32□□□□□ -1.88
HMGB1P09429 CENPUP1-201ENST00000526649 1202 ntBASIC3.32□□□□□ -1.88
HMGB1P09429 AC022080.3-201ENST00000544433 482 ntBASIC3.32□□□□□ -1.88
HMGB1P09429 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.32□□□□□ -1.88
HMGB1P09429 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.32□□□□□ -1.88
HMGB1P09429 VN1R107P-201ENST00000601784 209 ntBASIC3.32□□□□□ -1.88
HMGB1P09429 AL132822.1-201ENST00000617063 513 ntBASIC3.32□□□□□ -1.88
HMGB1P09429 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.32□□□□□ -1.88
HMGB1P09429 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HMGB1P09429 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.32□□□□□ -1.88
HMGB1P09429 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.31□□□□□ -1.88
HMGB1P09429 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HMGB1P09429 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
HMGB1P09429 RNU4-56P-201ENST00000364700 142 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 MIR518A2-201ENST00000384966 87 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 MIR181B1-201ENST00000385240 110 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.31□□□□□ -1.88
HMGB1P09429 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.31□□□□□ -1.88
HMGB1P09429 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 AL031659.1-201ENST00000447075 539 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.31□□□□□ -1.88
HMGB1P09429 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.31□□□□□ -1.88
HMGB1P09429 GSTA11P-201ENST00000452866 669 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 AC003982.1-202ENST00000469928 248 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 RPS29P26-201ENST00000477483 171 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 AC022447.4-201ENST00000504053 364 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HMGB1P09429 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.31□□□□□ -1.88
HMGB1P09429 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.31□□□□□ -1.88
HMGB1P09429 TRAV32-201ENST00000553993 340 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 MIR4287-201ENST00000579398 78 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 MIR3136-201ENST00000583498 78 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 ZNF861P-201ENST00000588126 639 ntBASIC3.31□□□□□ -1.88
HMGB1P09429 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HMGB1P09429 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HMGB1P09429 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.3□□□□□ -1.88
HMGB1P09429 RNA5SP276-201ENST00000362580 94 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 RNU6-1159P-201ENST00000362933 107 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 SNORA12-201ENST00000391162 147 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 CALM2P3-201ENST00000400429 449 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 AL590004.2-201ENST00000404787 371 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 CBX3P6-201ENST00000430257 527 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 SNAP23P1-201ENST00000433229 246 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 SNORA31.16-201ENST00000516773 139 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 SNORA70.24-201ENST00000517233 118 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 RNU6-323P-201ENST00000521915 107 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 AC018630.3-201ENST00000542637 96 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 AL512360.1-201ENST00000555346 234 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 AC018889.1-201ENST00000605372 397 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 AL357078.3-201ENST00000607528 618 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 AC005046.1-201ENST00000608515 625 ntBASIC3.3□□□□□ -1.88
HMGB1P09429 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HMGB1P09429 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
HMGB1P09429 RNU4-15P-201ENST00000362613 141 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 Y_RNA.194-201ENST00000363985 102 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 Y_RNA.378-201ENST00000365652 113 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 RNU6-38P-201ENST00000384085 107 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 SNORA44-201ENST00000384584 132 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 SNORA40.19-201ENST00000390846 128 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 MIR1294-201ENST00000408503 142 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.29□□□□□ -1.88
HMGB1P09429 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.29□□□□□ -1.88
HMGB1P09429 RPS3AP12-201ENST00000443616 753 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 AC245102.2-201ENST00000448956 180 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.29□□□□□ -1.88
HMGB1P09429 RNU6-333P-201ENST00000459117 107 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms