Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC009541.1-201ENST00000438279 2662 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 Y_RNA.60-201ENST00000362831 98 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 RNU6-778P-201ENST00000363269 103 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 RNU4-70P-201ENST00000384579 139 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 RNU6-658P-201ENST00000384606 106 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 MIR518D-201ENST00000385014 87 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 MIR93-201ENST00000385024 80 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 U3.19-201ENST00000390893 196 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 SNORA48.5-201ENST00000391143 135 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 RNA5SP129-201ENST00000410276 118 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 RNU2-64P-201ENST00000411315 191 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 RPL21P40-201ENST00000428586 483 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 MTND4LP30-201ENST00000454092 297 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 AC025445.1-201ENST00000502728 300 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 SNORA31.6-201ENST00000516241 130 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 AC091903.1-201ENST00000624322 454 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 SCARNA4-201ENST00000629045 128 ntBASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC87Q9NVE4 IPO8P1-201ENST00000455509 3109 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 AL133383.2-201ENST00000622958 2336 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 MIR335-201ENST00000362173 94 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 Z98749.2-208ENST00000381646 500 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 RNU1-73P-201ENST00000383971 164 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 MIR888-201ENST00000401186 77 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 RNU2-25P-201ENST00000411041 191 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 BX679664.1-201ENST00000434429 253 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 RPL23AP22-201ENST00000437556 453 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 HMGB3P8-201ENST00000449709 577 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 UBE2DNL-203ENST00000474922 222 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 MTND1P19-201ENST00000511780 315 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 AC093023.1-201ENST00000547375 507 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 AC090617.3-201ENST00000573670 475 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 MIR3124-201ENST00000582636 67 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 AC012603.1-201ENST00000606424 528 ntBASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC87Q9NVE4 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 AL358453.1-201ENST00000422522 250 ntBASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 AC017083.1-201ENST00000428093 483 ntBASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 AC011742.1-201ENST00000431448 434 ntBASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 RPS6P12-201ENST00000432491 726 ntBASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 AC098831.1-201ENST00000440661 216 ntBASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 AC025518.1-201ENST00000479856 347 ntBASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 SYF2P1-201ENST00000550658 413 ntBASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 MIR3690-201ENST00000580266 75 ntBASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 Y_RNA.772-201ENST00000606692 102 ntBASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 AC241585.2-209ENST00000638217 143 ntBASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC87Q9NVE4 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 RNU4-35P-201ENST00000362588 141 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 RNU6-942P-201ENST00000363002 107 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 SNORD115-32-201ENST00000364079 82 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 RNU6-968P-201ENST00000384076 107 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 SNORD115-46-201ENST00000390982 71 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 RNU6-121P-201ENST00000410525 99 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 RNU6-1203P-201ENST00000410703 110 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 NDUFS5P4-201ENST00000412983 318 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 AC004383.1-201ENST00000438135 289 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 RPL23AP14-201ENST00000468281 468 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 AC010469.2-201ENST00000496412 480 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 AC016256.1-201ENST00000547971 354 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 H3F3AP1-201ENST00000559984 334 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 RMST_6.1-201ENST00000611980 203 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 MIR6134-201ENST00000617606 109 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 AC024581.2-201ENST00000619986 252 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms