Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 PTP4A1P4-201ENST00000512479 322 ntBASIC3.17□□□□□ -1.9
VPS50Q96JG6 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS50Q96JG6 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.17□□□□□ -1.9
VPS50Q96JG6 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS50Q96JG6 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS50Q96JG6 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS50Q96JG6 AC019193.3-201ENST00000609144 554 ntBASIC3.17□□□□□ -1.9
VPS50Q96JG6 AL157817.1-201ENST00000614264 790 ntBASIC3.17□□□□□ -1.9
VPS50Q96JG6 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS50Q96JG6 GABRG2-229ENST00000641017 3628 ntBASIC3.17□□□□□ -1.9
VPS50Q96JG6 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
VPS50Q96JG6 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS50Q96JG6 AC099654.7-201ENST00000635788 2127 ntBASIC3.17□□□□□ -1.9
VPS50Q96JG6 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
VPS50Q96JG6 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS50Q96JG6 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS50Q96JG6 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS50Q96JG6 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS50Q96JG6 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS50Q96JG6 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS50Q96JG6 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS50Q96JG6 RNU6-78P-201ENST00000362897 107 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 U3.6-201ENST00000363622 211 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 RNU6-1317P-201ENST00000364582 104 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 RNU6-842P-201ENST00000384269 107 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 SNORA26.7-201ENST00000391288 122 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 U3.37-201ENST00000408528 213 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 NDUFS5P4-201ENST00000412983 318 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 RPL32P35-201ENST00000415214 394 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS50Q96JG6 AC236972.1-201ENST00000433225 199 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 AL714022.1-201ENST00000439897 151 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 RPL21P2-201ENST00000440049 481 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 RPL23AP58-201ENST00000440453 469 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 HIGD1AP2-201ENST00000446367 280 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS50Q96JG6 BTF3P15-201ENST00000455606 336 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 Y_RNA.653-201ENST00000459091 95 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.16□□□□□ -1.9
VPS50Q96JG6 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS50Q96JG6 AC093303.1-201ENST00000514549 295 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 RNA5SP217-201ENST00000515959 91 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 RNU6-581P-201ENST00000516214 105 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 RNU1-143P-201ENST00000516296 146 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.16□□□□□ -1.9
VPS50Q96JG6 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS50Q96JG6 MIR5690-201ENST00000583739 73 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS50Q96JG6 AC011494.1-201ENST00000596454 237 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 MIR3976-201ENST00000606807 139 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 U1.23-201ENST00000610293 146 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 RNU1-68P-201ENST00000615382 146 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 MIR6134-201ENST00000617606 109 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 U1.39-201ENST00000621562 146 ntBASIC3.16□□□□□ -1.9
VPS50Q96JG6 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS50Q96JG6 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS50Q96JG6 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS50Q96JG6 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS50Q96JG6 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
VPS50Q96JG6 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.15□□□□□ -1.9
VPS50Q96JG6 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.15□□□□□ -1.9
VPS50Q96JG6 RNU6-942P-201ENST00000363002 107 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 RNU6-593P-201ENST00000364716 112 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 RNU5E-7P-201ENST00000365290 117 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 SNORD42.2-201ENST00000365570 69 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 RNU6-474P-201ENST00000384243 107 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 RNU6-331P-201ENST00000384724 107 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 Z82205.1-201ENST00000428456 297 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 MTCYBP6-201ENST00000441810 138 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS50Q96JG6 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VPS50Q96JG6 PCMTD1P1-201ENST00000455560 355 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 SNORD5.1-201ENST00000458800 75 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 AC008155.2-201ENST00000464337 397 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS50Q96JG6 MTCYBP40-201ENST00000509390 1135 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 RNU6-120P-201ENST00000516077 103 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 RNA5SP384-201ENST00000516615 116 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 Y_RNA.708-201ENST00000516950 96 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 SCARNA20.6-201ENST00000517251 106 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 MIR5680-201ENST00000577577 84 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS50Q96JG6 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS50Q96JG6 RPL23AP78-201ENST00000599928 470 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 AC009314.1-201ENST00000603871 304 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 AL133215.3-201ENST00000609801 448 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS50Q96JG6 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS50Q96JG6 AC090971.5-201ENST00000621102 293 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 U4.7-201ENST00000638126 106 ntBASIC3.15□□□□□ -1.91
VPS50Q96JG6 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VPS50Q96JG6 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
VPS50Q96JG6 MTND4P23-201ENST00000447723 1363 ntBASIC3.14□□□□□ -1.91
VPS50Q96JG6 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS50Q96JG6 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
VPS50Q96JG6 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS50Q96JG6 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS50Q96JG6 RPL9P7-201ENST00000330965 580 ntBASIC3.14□□□□□ -1.91
VPS50Q96JG6 RNU6-1227P-201ENST00000383981 107 ntBASIC3.14□□□□□ -1.91
VPS50Q96JG6 RNU6-790P-201ENST00000384479 105 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 283.4 ms