Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SH3RF1Q7Z6J0 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.99□□□□□ -1.61
SH3RF1Q7Z6J0 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
SH3RF1Q7Z6J0 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 AC092435.4-201ENST00000623012 4159 ntBASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 U3.19-201ENST00000390893 196 ntBASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 RPL30P13-201ENST00000418873 348 ntBASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 RPS15AP5-201ENST00000436276 388 ntBASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 RNU6-155P-201ENST00000516347 100 ntBASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 RNU6-1183P-201ENST00000517054 60 ntBASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 MIR5571-201ENST00000577998 113 ntBASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 AC136601.2-201ENST00000604356 474 ntBASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 MIR6075-201ENST00000620782 95 ntBASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SH3RF1Q7Z6J0 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 AL356489.2-201ENST00000566968 3528 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 MIR331-201ENST00000362302 94 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 SNORD56.1-201ENST00000362913 68 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 RNU6-873P-201ENST00000363833 107 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 Y_RNA.333-201ENST00000365274 102 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 Y_RNA.498-201ENST00000384460 102 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 MIR487A-201ENST00000385009 80 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 AL356095.1-201ENST00000417217 199 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 AC244098.2-201ENST00000422068 99 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 AC009237.8-201ENST00000445492 379 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 AL121594.1-201ENST00000475906 575 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 AC009127.3-201ENST00000570531 403 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 RN7SL600P-201ENST00000581811 299 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 AC019159.1-201ENST00000605094 187 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 AL357075.2-201ENST00000614906 189 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 AC092628.2-201ENST00000622492 339 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 AC112484.5-201ENST00000624189 228 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 MIR6715B-201ENST00000637172 77 ntBASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SH3RF1Q7Z6J0 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
SH3RF1Q7Z6J0 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SH3RF1Q7Z6J0 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 AL022322.2-201ENST00000624072 20397 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 AC118273.1-201ENST00000525324 3006 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 RNU1-108P-201ENST00000362556 161 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-755P-201ENST00000364400 103 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-275P-201ENST00000364910 107 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 Y_RNA.309-201ENST00000365046 111 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-1310P-201ENST00000384153 107 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-429P-201ENST00000384582 108 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 AC112220.1-201ENST00000434628 355 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 RNU7-121P-201ENST00000516604 62 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 AC090281.1-201ENST00000523019 276 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 AC127455.1-201ENST00000565496 145 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 MTND6P33-201ENST00000571794 183 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 AC020895.1-201ENST00000595362 272 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 AC113403.1-201ENST00000604910 193 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 AL138721.1-201ENST00000616756 179 ntBASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms