Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP53Q70EK8 RPL23AP82-202ENST00000427528 469 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 HMGN2P31-201ENST00000432430 273 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.78□□□□□ -1.8
USP53Q70EK8 FCF1P4-201ENST00000448326 183 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.78□□□□□ -1.8
USP53Q70EK8 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.78□□□□□ -1.8
USP53Q70EK8 RPL21P11-201ENST00000461458 483 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 RPL30P14-201ENST00000482744 348 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 AC097462.2-201ENST00000504623 481 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.78□□□□□ -1.8
USP53Q70EK8 RPS29P30-201ENST00000600975 111 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 AC006557.5-201ENST00000603126 811 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 AL390123.1-201ENST00000603216 237 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 AL159153.1-201ENST00000619688 317 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 HSPA8P1-201ENST00000425843 1833 ntBASIC3.78□□□□□ -1.8
USP53Q70EK8 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USP53Q70EK8 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.78□□□□□ -1.8
USP53Q70EK8 AP000560.1-201ENST00000624150 1937 ntBASIC3.78□□□□□ -1.81
USP53Q70EK8 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.81
USP53Q70EK8 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.77□□□□□ -1.81
USP53Q70EK8 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
USP53Q70EK8 AC233981.2-201ENST00000611524 1614 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.77□□□□□ -1.81
USP53Q70EK8 SNORD56.1-201ENST00000362913 68 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 RNU6-968P-201ENST00000384076 107 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 U8.11-201ENST00000384699 133 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 U8.12-201ENST00000384701 133 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 RPS29P4-201ENST00000414733 161 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 EIF1AXP1-201ENST00000419267 435 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 RPL23AP95-201ENST00000426806 265 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 AC005300.1-201ENST00000428401 373 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.77□□□□□ -1.81
USP53Q70EK8 SNORA71B-202ENST00000439232 272 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.77□□□□□ -1.81
USP53Q70EK8 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.77□□□□□ -1.81
USP53Q70EK8 U8.18-201ENST00000459285 133 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 RPL31P61-201ENST00000496160 376 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 AC074250.1-201ENST00000511117 192 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 Y_RNA.668-201ENST00000516233 93 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 Y_RNA.706-201ENST00000516933 99 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 AC091144.1-201ENST00000519573 138 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 AC022695.1-201ENST00000522089 237 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 MRPS36P4-201ENST00000534436 298 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.77□□□□□ -1.81
USP53Q70EK8 MIR3200-201ENST00000580767 85 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.77□□□□□ -1.81
USP53Q70EK8 RAC1P9-201ENST00000604990 392 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 AC019159.1-201ENST00000605094 187 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.77□□□□□ -1.81
USP53Q70EK8 SCARNA4-201ENST00000629045 128 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 ADAM3A-203ENST00000461344 2157 ntBASIC3.77□□□□□ -1.81
USP53Q70EK8 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.77□□□□□ -1.81
USP53Q70EK8 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
USP53Q70EK8 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.77□□□□□ -1.81
USP53Q70EK8 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
USP53Q70EK8 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.76□□□□□ -1.81
USP53Q70EK8 Y_RNA.214-201ENST00000364201 112 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 RNU6-1286P-201ENST00000383871 107 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 RNA5SP306-201ENST00000411087 107 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.76□□□□□ -1.81
USP53Q70EK8 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.76□□□□□ -1.81
USP53Q70EK8 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.76□□□□□ -1.81
USP53Q70EK8 DYNLT3P2-201ENST00000442517 295 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.76□□□□□ -1.81
USP53Q70EK8 snoU13.28-201ENST00000459235 104 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 MED28P2-201ENST00000475771 317 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 AC091874.1-201ENST00000511402 339 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 SNORA25.11-201ENST00000515935 105 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 RNU6-581P-201ENST00000516214 105 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 SNORA31.23-201ENST00000517219 133 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 AC006199.1-201ENST00000548728 219 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 GNRHR2P1-201ENST00000555315 631 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.76□□□□□ -1.81
USP53Q70EK8 AC009163.5-201ENST00000575421 637 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.76□□□□□ -1.81
USP53Q70EK8 HMGN2P15-201ENST00000585707 270 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 RPL23AP88-201ENST00000605759 454 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 U3.45-201ENST00000607547 219 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.76□□□□□ -1.81
USP53Q70EK8 MIR8062-201ENST00000621515 85 ntBASIC3.76□□□□□ -1.81
USP53Q70EK8 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.76□□□□□ -1.81
USP53Q70EK8 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
USP53Q70EK8 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.76□□□□□ -1.81
USP53Q70EK8 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
USP53Q70EK8 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
USP53Q70EK8 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
USP53Q70EK8 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
USP53Q70EK8 ZNF962P-201ENST00000443465 3140 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 AF117829.1-206ENST00000621883 3802 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 RNU6-858P-201ENST00000362436 107 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 MIR634-201ENST00000385208 97 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.75□□□□□ -1.81
USP53Q70EK8 AP000907.1-201ENST00000428428 510 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 CBX3P6-201ENST00000430257 527 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 AC011742.1-201ENST00000431448 434 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 Z82188.1-201ENST00000436709 154 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 177.4 ms